Browse Element(s) Details


Os.37593.3.S1_at

Description gb:AK108852.1
DB_XREF= gi:32994061
TID=Os.37593.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37593 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0677H08.6 (P0677H08.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-A09, full insert sequence.
FL= gb:AK108852.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6476011/11integral membrane Yip1 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64720Os.14322.2.S1_at11/111+37878839..37883345expressed protein
LOC_Os01g64720OsAffx.11732.2.S1_s_at11/111+37878839..37883345expressed protein
LOC_Os01g64720Os.14322.1.S1_at11/111+37878839..37883345expressed protein
LOC_Os01g64720Os.14322.2.S1_x_at11/111+37878839..37883345expressed protein
LOC_Os01g64730Os.411.1.S1_a_at11/111+37883523..37886953G-box binding factor 4, putative, expressed
LOC_Os01g64730Os.411.1.S1_at11/111+37883523..37886953G-box binding factor 4, putative, expressed
LOC_Os01g64730Os.5277.1.S1_at11/111+37883523..37886953G-box binding factor 4, putative, expressed
LOC_Os01g64730Os.411.2.S1_x_at9/111+37883523..37886953G-box binding factor 4, putative, expressed
LOC_Os01g64740OsAffx.23916.1.S1_at11/111+37888701..37890687hypothetical protein
LOC_Os01g64750Os.54156.1.S1_x_at11/111+37892903..37902840Glycosyltransferase family 28 N-terminal domain containing protein, expressed
LOC_Os01g64760Os.37593.3.S1_at11/111+37903736..37905956integral membrane Yip1 family protein, putative, expressed
LOC_Os01g64770Os.37593.1.S1_a_at11/111+37907424..37911685Polypyrimidine tract-binding protein homolog 3, putative, expressed
LOC_Os01g64780Os.10553.1.S1_s_at11/111+37911640..37914964transmembrane protein, putative, expressed
LOC_Os01g64790NANA1+37916627..37919295AP2 domain containing protein, expressed
LOC_Os01g64800NANA1+37921920..37922189hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37593.3.S1_at--1028--4192Chr01:37905803..37905827 (25 bp)
CCCGTCTTCCTCATGTATATTTCAG
LOC_Os01g64760
Os.37593.3.S1_at--396--6891Chr01:37905817..37905841 (25 bp)
GTATATTTCAGTTGGTTTCCTCATA
LOC_Os01g64760
Os.37593.3.S1_at--608--7871Chr01:37905830..37905854 (25 bp)
GGTTTCCTCATAATTGCCATAGACT
LOC_Os01g64760
Os.37593.3.S1_at--765--3551Chr01:37905847..37905871 (25 bp)
CATAGACTAATGGTGGGCTGAACTT
LOC_Os01g64760
Os.37593.3.S1_at--291--7491Chr01:37905859..37905883 (25 bp)
GTGGGCTGAACTTGTAGTCAATACC
LOC_Os01g64760
Os.37593.3.S1_at--1029--6931Chr01:37905872..37905896 (25 bp)
GTAGTCAATACCTAAACCGCTGAGA
LOC_Os01g64760
Os.37593.3.S1_at--1048--9931Chr01:37905880..37905904 (25 bp)
TACCTAAACCGCTGAGATTTTCCTC
LOC_Os01g64760
Os.37593.3.S1_at--39--6031Chr01:37905893..37905917 (25 bp)
GAGATTTTCCTCATTGAACCACCAG
LOC_Os01g64760
Os.37593.3.S1_at--916--51Chr01:37905905..37905929 (25 bp)
ATTGAACCACCAGAATACATACAGG
LOC_Os01g64760
Os.37593.3.S1_at--231--3091Chr01:37905918..37905942 (25 bp)
AATACATACAGGTTTGGGCAGAGAA
LOC_Os01g64760
Os.37593.3.S1_at--1111--8631Chr01:37905932..37905956 (25 bp)
TGGGCAGAGAATACGCCCCCTTAAG
LOC_Os01g64760
Target Sequence 
CCCGTCTTCCTCATGTATATTTCAGTTGGTTTCCTCATAATTGCCATAGACTAATGGTGGGCTGAACTTGTAGTCAATAC
CTAAACCGCTGAGATTTTCCTCATTGAACCACCAGAATACATACAGGTTTGGGCAGAGAATACGCCCCCTTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37593.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis