Browse Element(s) Details


Os.10553.1.S1_s_at

Description gb:AK061366.1
DB_XREF= gi:32971384
TID=Os.10553.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10553 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0677H08.7 (P0677H08.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-304-D06, full insert sequence.
FL= gb:AK061366.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6478011/11transmembrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64730Os.411.1.S1_a_at11/111+37883523..37886953G-box binding factor 4, putative, expressed
LOC_Os01g64730Os.411.1.S1_at11/111+37883523..37886953G-box binding factor 4, putative, expressed
LOC_Os01g64730Os.5277.1.S1_at11/111+37883523..37886953G-box binding factor 4, putative, expressed
LOC_Os01g64730Os.411.2.S1_x_at9/111+37883523..37886953G-box binding factor 4, putative, expressed
LOC_Os01g64740OsAffx.23916.1.S1_at11/111+37888701..37890687hypothetical protein
LOC_Os01g64750Os.54156.1.S1_x_at11/111+37892903..37902840Glycosyltransferase family 28 N-terminal domain containing protein, expressed
LOC_Os01g64760Os.37593.3.S1_at11/111+37903736..37905956integral membrane Yip1 family protein, putative, expressed
LOC_Os01g64770Os.37593.1.S1_a_at11/111+37907424..37911685Polypyrimidine tract-binding protein homolog 3, putative, expressed
LOC_Os01g64780Os.10553.1.S1_s_at11/111+37911640..37914964transmembrane protein, putative, expressed
LOC_Os01g64790NANA1+37916627..37919295AP2 domain containing protein, expressed
LOC_Os01g64800NANA1+37921920..37922189hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010222biological_processstem vascular tissue pattern formation
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10553.1.S1_s_at--956--891Chr01:37912577..37912601 (25 bp)
AGGCGACGAAGAACTGTGCAGCGTT
LOC_Os01g64780
Os.10553.1.S1_s_at--500--3891Chr01:37912564..37912588 (25 bp)
CTGTGCAGCGTTTATGTGCCAACAA
LOC_Os01g64780
Os.10553.1.S1_s_at--618--2191Chr01:37912543..37912567 (25 bp)
ACAAATCATCTTTACATTGGTGACA
LOC_Os01g64780
Os.10553.1.S1_s_at--1036--5671Chr01:37912522..37912546 (25 bp)
GACATATTTCTGGTGAACTCTGAGG
LOC_Os01g64780
Os.10553.1.S1_s_at--167--11Chr01:37912489..37912513 (25 bp)
AGACCAAATTTATCCATTCGAGAAG
LOC_Os01g64780
Os.10553.1.S1_s_at--728--8951Chr01:37912245..37912269 (25 bp)
TGACTATGCCACAGGTGATCGCGTC
LOC_Os01g64780
Os.10553.1.S1_s_at--401--3571Chr01:37912167..37912191 (25 bp)
CATAATGTCATACGAGAGCTCAAGT
LOC_Os01g64780
Os.10553.1.S1_s_at--857--4831Chr01:37912070..37912174 (25 bp)
GCTCAAGTGCTCAACACGATCGTGT
LOC_Os01g64780
Os.10553.1.S1_s_at--664--3051Chr01:37912036..37912060 (25 bp)
AATCGGTGTGACTCTGGTGCTCTGA
LOC_Os01g64780
Os.10553.1.S1_s_at--138--2011Chr01:37911842..37911866 (25 bp)
ACTCTTTGGTTGCTGACTGGTCTGA
LOC_Os01g64780
Os.10553.1.S1_s_at--784--6751Chr01:37911814..37911838 (25 bp)
GTTAACGTCCCTAGTGCAAGTGCAA
LOC_Os01g64780
Target Sequence 
AGGCGACGAAGAACTGTGCAGCGTTTATGTGCCAACAAATCATCTTTACATTGGTGACATATTTCTGGTGAACTCTGAGG
AGATAATAAGACCAAATTTATCCATTCGAGAAGGAATCGAAATAATTGTTTCTGGAGGAATGACTATGCCACAGGTGATC
GCGTCCCTTGAACCCACCCCAAGGAAGAGCCANAATATCCGTCTAAATAGAATAATGACATAATGTCATACGAGAGCTCA
AGTGCTCAACACGATCGTGTTATGTGTGGAATCGGTGTGACTCTGGTGCTCTGACCATTGCTCTGNTCATCTTCGNTTCT
GNTGNGTCAAAATGTGGAGGCTGGNAGAGGAGAACACGGCGTGAGNATTGATCGAGCCATCTTANGCTCGTGGCATTACA
GAAGGTGGCGGAAGCACCATATCGATGCTCAGGAANNNNATTGGTTGTGTGTCACATGCCGCGCTACTCTTTGGTTGCTG
ACTGGTCTGAAATGTTAACGTCCCTAGTGCAAGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10553.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis