Browse Element(s) Details


Os.56042.1.S1_at

Description gb:AK109163.1
DB_XREF= gi:32994372
TID=Os.56042.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56042 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-G10, full insert sequence.
FL= gb:AK109163.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1002011/11expressed protein
LOC_Os10g105401/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09960OsAffx.27541.1.S1_at10/116+5081730..5083092expressed protein
LOC_Os06g09960OsAffx.24432.1.S1_at3/116+5081730..5083092expressed protein
LOC_Os06g09970OsAffx.4783.1.S1_at11/116+5084604..5085091hypothetical protein
LOC_Os06g09980Os.54864.2.S1_at11/116+5089958..5091121expressed protein
LOC_Os06g09990OsAffx.27542.1.S1_s_at11/116+5096036..5096381hypothetical protein
LOC_Os06g09990Os.39031.1.S1_at5/116+5096036..5096381hypothetical protein
LOC_Os06g10000Os.55490.1.S1_at10/116+5101390..5102442expressed protein
LOC_Os06g10000Os.57449.1.S1_x_at1/116+5101390..5102442expressed protein
LOC_Os06g10010NANA6+5103666..5104193hypothetical protein
LOC_Os06g10020Os.56042.1.S1_at11/116+5105166..5105930expressed protein
LOC_Os06g10030NANA6+5108369..5108719hypothetical protein
LOC_Os06g10040NANA6+5117540..5117878hypothetical protein
LOC_Os06g10050NANA6+5120690..5121061hypothetical protein
LOC_Os06g10060OsAffx.23916.1.S1_at1/116+5124394..5124768hypothetical protein
LOC_Os06g10070OsAffx.4784.1.S1_at11/116+5128816..5129580expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56042.1.S1_at--479--9291Chr06:5105355..5105379 (25 bp)
TCCGCCTGTTGCAGGACGTCGCCGG
LOC_Os06g10020
Os.56042.1.S1_at--176--7371Chr06:5105522..5105546 (25 bp)
GTGACCCTGACGGTGGCCTTCGCTG
LOC_Os06g10020
Os.56042.1.S1_at--972--8391Chr06:5105653..5105677 (25 bp)
GGCGCGGCTGCAACTACGAGAAGTC
LOC_Os06g10020
Os.56042.1.S1_at--210--5971Chr06:5105670..5105694 (25 bp)
GAGAAGTCGAGAAGCTGCCCGCGCC
LOC_Os06g10020
Os.56042.1.S1_at--287--7852Chr06:5105735..5105759 (25 bp)
GGTAGCCTGGTACAGTGGTACTACT
LOC_Os06g10020
Os.56042.1.S1_at--856--8491Chr06:5105750..5105774 (25 bp)
TGGTACTACTCGACGTTTTACTACG
LOC_Os06g10020
Os.56042.1.S1_at--929--10371Chr06:5105765..5105789 (25 bp)
TTTTACTACGGCTCCATCATCTGTG
LOC_Os06g10020
Os.56042.1.S1_at--235--8332Chr10:5588603..5588622 (20 bp)
GGCTCCATCATCTGTGTGTGTGTGT
LOC_Os10g10540
Os.56042.1.S1_at--204--9131Chr06:5105810..5105834 (25 bp)
TGCTGTTTTTCTGTGGTAGTCTTGT
LOC_Os06g10020
Os.56042.1.S1_at--1107--6931Chr06:5105825..5105849 (25 bp)
GTAGTCTTGTGATGTTAATTTGCGA
LOC_Os06g10020
Os.56042.1.S1_at--197--8831Chr06:5105857..5105881 (25 bp)
TGATATTCTGAGATCACTTGATATG
LOC_Os06g10020
Target Sequence 
TCCGCCTGTTGCAGGACGTCGCCGGGAAGAACCCCGCCGCCGACGTCGCCATCATCGTCGGCGCCATCTGCGCCGTCACC
TCCGCCGTGCTCGGCGCCATGCTCCTGGTGCGCTTCATCCGCGTCGCGGGCGACGCTCCTGACCGGGCCACGGAGCGCTT
CGCGCGGGTGACCCTGACGGTGGCCTTCGCTGCCATCTTCCTCGTCGCCGGCTGCCTCCTCGCCGCCCCCGCCGCCGACA
AGTTCGCCAGCTCCGCCTGACGCGCGGGGGGCGCGCGCTCGGCCGCCCGGCGGATTCGGGCGCGGCTGCAACTACGAGAA
GTCGAGAAGCTGCCCGCGCCGCCGACCTGTGGTGCGCCGTGCGCGGCGAGCCCCGGTGCTGGTAGCCTGGTACAGTGGTA
CTACTCGACGTTTTACTACGGCTCCATCATCTGTGTGTGTGTGTGTTTTTTTTTTTTTGCTGTTTTTCTGTGGTAGTCTT
GTGATGTTAATTTGCGAATGTGAGTGATATTCTGAGATCACTTGATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis