Browse Element(s) Details

OsAffx.27541.1.S1_at

Description

tigr:9634.m00969
TID=OsAffx.27541.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g09960	10/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g09920	NA	NA	6	+	5056623..5057036	hypothetical protein
LOC_Os06g09930	Os.39747.1.S1_at	11/11	6	+	5059665..5063953	Identical to a putative G-protein-coupled receptor from , putative, expressed
LOC_Os06g09940	OsAffx.27540.1.S1_at	11/11	6	+	5067260..5067577	hypothetical protein
LOC_Os06g09950	OsAffx.15341.1.S1_at	11/11	6	+	5070901..5071113	hypothetical protein
LOC_Os06g09960	OsAffx.27541.1.S1_at	10/11	6	+	5081730..5083092	expressed protein
LOC_Os06g09960	OsAffx.24432.1.S1_at	3/11	6	+	5081730..5083092	expressed protein
LOC_Os06g09970	OsAffx.4783.1.S1_at	11/11	6	+	5084604..5085091	hypothetical protein
LOC_Os06g09980	Os.54864.2.S1_at	11/11	6	+	5089958..5091121	expressed protein
LOC_Os06g09990	OsAffx.27542.1.S1_s_at	11/11	6	+	5096036..5096381	hypothetical protein
LOC_Os06g09990	Os.39031.1.S1_at	5/11	6	+	5096036..5096381	hypothetical protein
LOC_Os06g10000	Os.55490.1.S1_at	10/11	6	+	5101390..5102442	expressed protein
LOC_Os06g10000	Os.57449.1.S1_x_at	1/11	6	+	5101390..5102442	expressed protein
LOC_Os06g10010	NA	NA	6	+	5103666..5104193	hypothetical protein
LOC_Os06g10020	Os.56042.1.S1_at	11/11	6	+	5105166..5105930	expressed protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27541.1.S1_at--483--575	1	Chr06:5081824..5081848 (25 bp)	GACGGAGACGACAGCCATGACCCGG	LOC_Os06g09960
OsAffx.27541.1.S1_at--494--139	1	Chr06:5081829..5081853 (25 bp)	AGACGACAGCCATGACCCGGCGACG	LOC_Os06g09960
OsAffx.27541.1.S1_at--979--529	1	Chr06:5081974..5081998 (25 bp)	GAAGGTTCGCGACGATGTGATGGGC	LOC_Os06g09960
OsAffx.27541.1.S1_at--897--479	1	NONE	GCTCGCTGCGGGAAGTGGCATCCAT	NONE
OsAffx.27541.1.S1_at--1075--531	1	Chr06:5082918..5082940 (23 bp)	GAAGTGGCATCCATCACCGCCTCTG	LOC_Os06g09960
OsAffx.27541.1.S1_at--521--921	1	Chr06:5082959..5082983 (25 bp)	TCCAAAACTACAACGCACCAGGGCT	LOC_Os06g09960
OsAffx.27541.1.S1_at--290--509	1	Chr06:5082973..5082997 (25 bp)	GCACCAGGGCTATCTTCTACAATGG	LOC_Os06g09960
OsAffx.27541.1.S1_at--157--831	1	Chr06:5082980..5083004 (25 bp)	GGCTATCTTCTACAATGGCAAGCTA	LOC_Os06g09960
OsAffx.27541.1.S1_at--60--297	1	Chr06:5082993..5083017 (25 bp)	AATGGCAAGCTATCTCGGCGAAGGC	LOC_Os06g09960
OsAffx.27541.1.S1_at--1024--1015	1	Chr06:5083003..5083027 (25 bp)	TATCTCGGCGAAGGCACTGCGTTGC	LOC_Os06g09960
OsAffx.27541.1.S1_at--813--293	1	Chr06:5083013..5083037 (25 bp)	AAGGCACTGCGTTGCAAAGAATGCA	LOC_Os06g09960

Target Sequence

GACGGAGACGACAGCCATGACCCGGCGACGACCTCGCGATGGAGACGACGGCGATGACCCTGCGACGGCGGCGACGGCGC
CCCCGACCAGATCTGGCCACCGCTCCCCGTGCGCCGCTCGCTGCGGGAAGGTTGGCGACGGCGGCGGCGGGAAGGTTCGC
GACGATGTGATGGGCGGCGCTGGCGACGGCGCGACGGGCGCCGACGGCGCCCCCGACCAGACCTGTCCACCGCCCCCCGT
GCGCTGCTCGCTGCGGGAAGTGGCATCCATCACCGCCTCTGCCTCCATCACCGCGGCCATCCAAAACTACAACGCACCAG
GGCTATCTTCTACAATGGCAAGCTATCTCGGCGAAGGCACTGCGTTGCAAAGAATGCA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis