Browse Element(s) Details


OsAffx.24432.1.S1_at

Description tigr:9630.m02485
TID=OsAffx.24432.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2638011/11hypothetical protein
LOC_Os06g099603/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26330NANA2+15461305..15461963expressed protein
LOC_Os02g26349Os.49535.1.A1_at11/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26349Os.39411.1.A1_at1/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26349OsAffx.6362.1.S1_at1/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26349Os.45957.4.S1_x_at1/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26370Os.10077.1.S1_at11/112+15476870..15480056expressed protein
LOC_Os02g26370Os.10077.2.S1_at10/112+15476870..15480056expressed protein
LOC_Os02g26380OsAffx.24432.1.S1_at11/112+15486938..15487410hypothetical protein
LOC_Os02g26390Os.9623.1.A1_at11/112+15490019..15492569expressed protein
LOC_Os02g26400OsAffx.12202.1.S1_at11/112+15496752..15501303nuclease, EndA/NucM family protein, expressed
LOC_Os02g26410Os.46012.2.S1_x_at6/112+15509126..15509677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26410Os.46012.3.S1_x_at3/112+15509126..15509677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26410Os.27088.1.A1_x_at3/112+15509126..15509677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26420NANA2+15510255..15513417retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24432.1.S1_at--651--3551Chr02:15487308..15487332 (25 bp)
CATCAGAGTTCGTGCCCCGATCGCA
LOC_Os02g26380
OsAffx.24432.1.S1_at--772--1651Chr02:15487283..15487307 (25 bp)
AGCGCGCTTGCGCAGAGCCGGAGGA
LOC_Os02g26380
OsAffx.24432.1.S1_at--426--7571Chr02:15487043..15487064 (22 bp)
GGGGGGACACTCATTGGACCACCAG
LOC_Os02g26380
OsAffx.24432.1.S1_at--375--7691Chr02:15487018..15487042 (25 bp)
GGGTATCCTCCATTGTATGAGGAGT
LOC_Os02g26380
OsAffx.24432.1.S1_at--45--9251Chr02:15487010..15487034 (25 bp)
TCCATTGTATGAGGAGTTCCCCAGA
LOC_Os02g26380
OsAffx.24432.1.S1_at--282--8851Chr02:15487001..15487025 (25 bp)
TGAGGAGTTCCCCAGAAAGTGCCCT
LOC_Os02g26380
OsAffx.24432.1.S1_at--874--10651Chr02:15486994..15487018 (25 bp)
TTCCCCAGAAAGTGCCCTCAGTTAG
LOC_Os02g26380
OsAffx.24432.1.S1_at--640--4351Chr02:15486990..15487014 (25 bp)
CCAGAAAGTGCCCTCAGTTAGTGAG
LOC_Os02g26380
OsAffx.24432.1.S1_at--73--3756Chr07:18697722..18697742 (21 bp)
CTCAGTTAGTGAGGGCACCCATAGA
NONE
OsAffx.24432.1.S1_at--1052--7375Chr07:18697726..18697747 (22 bp)
GTGAGGGCACCCATAGAGTGTCCCT
NONE
OsAffx.24432.1.S1_at--808--6133Chr07:18697728..18697747 (20 bp)
GAGGGCACCCATAGAGTGTCCCTGG
NONE
Target Sequence 
CATCAGAGTTCGTGCCCCGATCGCAAGCGCGCTTGCGCAGAGCCGGAGGAGGAGCGCAAGGAGTGGGAGGAGGAGGCGGC
TGCGGGGGGACACTCATTGGACCACCAGGGGTATCCTCCATTGTATGAGGAGTTCCCCAGAAAGTGCCCTCAGTTAGTGA
GGGCACCCATAGAGTGTCCCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24432.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis