Browse Element(s) Details


Os.49535.1.A1_at

Description gb:AK109833.1
DB_XREF= gi:32995042
TID=Os.49535.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49535 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-C12, full insert sequence.
FL= gb:AK109833.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2634911/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26300Os.51701.1.S1_at11/112+15441358..15445923expressed protein
LOC_Os02g26310OsAffx.2759.1.S1_at11/112+15447076..15447835hypothetical protein
LOC_Os02g26310OsAffx.2759.1.S1_x_at11/112+15447076..15447835hypothetical protein
LOC_Os02g26320Os.55769.1.S1_at11/112+15453155..15454310Fasciclin-like arabinogalactan protein 10 precursor, putative, expressed
LOC_Os02g26330NANA2+15461305..15461963expressed protein
LOC_Os02g26349Os.49535.1.A1_at11/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26349Os.39411.1.A1_at1/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26349OsAffx.6362.1.S1_at1/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26349Os.45957.4.S1_x_at1/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26370Os.10077.1.S1_at11/112+15476870..15480056expressed protein
LOC_Os02g26370Os.10077.2.S1_at10/112+15476870..15480056expressed protein
LOC_Os02g26380OsAffx.24432.1.S1_at11/112+15486938..15487410hypothetical protein
LOC_Os02g26390Os.9623.1.A1_at11/112+15490019..15492569expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49535.1.A1_at--695--2251Chr02:15462486..15462510 (25 bp)
AAATTTGGCCGCAGCTTTATACTCT
LOC_Os02g26349
Os.49535.1.A1_at--878--9471Chr02:15462464..15462488 (25 bp)
TCTGAACGTCTTGCTGAGTACTATC
LOC_Os02g26349
Os.49535.1.A1_at--355--6091Chr02:15462449..15462473 (25 bp)
GAGTACTATCTTGCATGCAGCGTTA
LOC_Os02g26349
Os.49535.1.A1_at--207--9811Chr02:15462379..15462403 (25 bp)
TAACGGCCGAGTTTTGCCTGTAACT
LOC_Os02g26349
Os.49535.1.A1_at--12--1951Chr02:15462357..15462381 (25 bp)
ACTGGTCAAGAGTTGGTTTCCCCTG
LOC_Os02g26349
Os.49535.1.A1_at--152--8591Chr02:15462344..15462368 (25 bp)
TGGTTTCCCCTGAATTTTACTGTAG
LOC_Os02g26349
Os.49535.1.A1_at--1102--2891Chr02:15462299..15462323 (25 bp)
AAGGTAAATTGTCCGCAACTGCACA
LOC_Os02g26349
Os.49535.1.A1_at--482--6632Chr11:19515111..19515646 (25 bp)
GTTGATTAGCCCCTAGGTTTGCAAA
NONE
Os.49535.1.A1_at--626--9771Chr02:15462225..15462249 (25 bp)
TAAGCCGGTGCTGACGTTTAAATTT
LOC_Os02g26349
Os.49535.1.A1_at--840--631Chr02:15462198..15462222 (25 bp)
ATGCTTTTCAGCACACGCTTAAACC
LOC_Os02g26349
Os.49535.1.A1_at--66--3731Chr02:15462166..15462190 (25 bp)
CTACGTTCTAATTCCACTTGTTCTG
LOC_Os02g26349
Target Sequence 
AAATTTGGCCGCAGCTTTATACTCTGAACGTCTTGCTGAGTACTATCTTGCATGCAGCGTTATAATTCTGAATATGTCGT
TAAATTTAACTTTCATATAGCTTTGGTTAACGGCCGAGTTTTGCCTGTAACTGGTCAAGAGTTGGTTTCCCCTGAATTTT
ACTGTAGTTATATGGTTGGCTGTTGGCAAGGTAAATTGTCCGCAACTGCACATTATCCAAGTTGATTAGCCCCTAGGTTT
GCAAATAGCAGAAACCATTTTTAAGCCGGTGCTGACGTTTAAATTTCAATGCTTTTCAGCACACGCTTAAACCTCGTTTT
CTACGTTCTAATTCCACTTGTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49535.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis