Browse Element(s) Details


Os.55769.1.S1_at

Description gb:AK108772.1
DB_XREF= gi:32993981
TID=Os.55769.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55769 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-H07, full insert sequence.
FL= gb:AK108772.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2632011/11Fasciclin-like arabinogalactan protein 10 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26280OsAffx.24431.1.S1_at9/112+15423739..15429165hypothetical protein
LOC_Os02g26280OsAffx.31892.1.S1_x_at3/112+15423739..15429165hypothetical protein
LOC_Os02g26280OsAffx.31892.3.S1_at2/112+15423739..15429165hypothetical protein
LOC_Os02g26280OsAffx.31892.5.S1_x_at1/112+15423739..15429165hypothetical protein
LOC_Os02g26280OsAffx.20733.1.S1_x_at1/112+15423739..15429165hypothetical protein
LOC_Os02g26290Os.6347.1.S1_at11/112+15430736..15431761expressed protein
LOC_Os02g26300Os.51701.1.S1_at11/112+15441358..15445923expressed protein
LOC_Os02g26310OsAffx.2759.1.S1_at11/112+15447076..15447835hypothetical protein
LOC_Os02g26310OsAffx.2759.1.S1_x_at11/112+15447076..15447835hypothetical protein
LOC_Os02g26320Os.55769.1.S1_at11/112+15453155..15454310Fasciclin-like arabinogalactan protein 10 precursor, putative, expressed
LOC_Os02g26330NANA2+15461305..15461963expressed protein
LOC_Os02g26349Os.49535.1.A1_at11/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26349Os.39411.1.A1_at1/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26349OsAffx.6362.1.S1_at1/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26349Os.45957.4.S1_x_at1/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26370Os.10077.1.S1_at11/112+15476870..15480056expressed protein
LOC_Os02g26370Os.10077.2.S1_at10/112+15476870..15480056expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55769.1.S1_at--746--8171Chr02:15453615..15453639 (25 bp)
GGAAGAAGTCGGATGCCCCGGCACC
LOC_Os02g26320
Os.55769.1.S1_at--115--811Chr02:15453486..15453510 (25 bp)
ATGGTCCGACTGAGGCAGACGCGCC
LOC_Os02g26320
Os.55769.1.S1_at--778--8431Chr02:15453394..15453418 (25 bp)
GGCCTTGGCGTCGTTGCACTTGTGG
LOC_Os02g26320
Os.55769.1.S1_at--537--9031Chr02:15453380..15453404 (25 bp)
TGCACTTGTGGTTCTCATCTTCCCC
LOC_Os02g26320
Os.55769.1.S1_at--687--10831Chr02:15453375..15453399 (25 bp)
TTGTGGTTCTCATCTTCCCCTCAGT
LOC_Os02g26320
Os.55769.1.S1_at--970--1991Chr02:15453347..15453371 (25 bp)
ACTCTGATCAATGCTAAAATGGTGG
LOC_Os02g26320
Os.55769.1.S1_at--128--3691Chr02:15453334..15453358 (25 bp)
CTAAAATGGTGGAGGCCGAGAAATC
LOC_Os02g26320
Os.55769.1.S1_at--219--4511Chr02:15453320..15453344 (25 bp)
GCCGAGAAATCGGAAGAGTTTATAA
LOC_Os02g26320
Os.55769.1.S1_at--923--10011Chr02:15453294..15453318 (25 bp)
TAGAATGACCATTAGGAAACGATAT
LOC_Os02g26320
Os.55769.1.S1_at--1060--2571Chr02:15453277..15453301 (25 bp)
AACGATATAGTCAGGGTTCACTCTA
LOC_Os02g26320
Os.55769.1.S1_at--137--2011Chr02:15453258..15453282 (25 bp)
ACTCTATCGGTTGAGACGTTTGTAT
LOC_Os02g26320
Target Sequence 
GGAAGAAGTCGGATGCCCCGGCACCGGGCCCGTCCGACGACGTCGACGACGACACCGCCGCCGACGCGCCGGGACCGGCG
GTGGATGGCCCCACGGCGGACGGGCCGGCGGCGGACGGTCCTGCGGCGGATGGTCCGACTGAGGCAGACGCGCCGGCGCA
CGACAAGGGCGACGTCGCAGACGCGCCGTCCGCCGCCGGCAGGGCGGTGGCCAGCAGCGCAGGCCTTGGCGTCGTTGCAC
TTGTGGTTCTCATCTTCCCCTCAGTCTCACTCTGATCAATGCTAAAATGGTGGAGGCCGAGAAATCGGAAGAGTTTATAA
ATAGAATGACCATTAGGAAACGATATAGTCAGGGTTCACTCTATCGGTTGAGACGTTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55769.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis