Browse Element(s) Details


OsAffx.24431.1.S1_at

Description tigr:9630.m02475
TID=OsAffx.24431.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g262809/11hypothetical protein
LOC_Os04g244502/11retrotransposon, putative, centromere-specific
LOC_Os09g116802/11hypothetical protein
LOC_Os10g117942/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g177801/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26230OsAffx.24430.1.S1_at11/112+15401669..15404723expressed protein
LOC_Os02g26230OsAffx.3301.1.S1_at1/112+15401669..15404723expressed protein
LOC_Os02g26240OsAffx.30013.5.S1_x_at2/112+15409428..15412239retrotransposon protein, putative, unclassified
LOC_Os02g26240Os.56292.1.S1_at1/112+15409428..15412239retrotransposon protein, putative, unclassified
LOC_Os02g26240Os.56292.1.S1_x_at1/112+15409428..15412239retrotransposon protein, putative, unclassified
LOC_Os02g26250OsAffx.422.1.S1_at1/112+15414849..15415337retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g26260NANA2+15416714..15416974hypothetical protein
LOC_Os02g26270NANA2+15419622..15423088retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g26280OsAffx.24431.1.S1_at9/112+15423739..15429165hypothetical protein
LOC_Os02g26280OsAffx.31892.1.S1_x_at3/112+15423739..15429165hypothetical protein
LOC_Os02g26280OsAffx.31892.3.S1_at2/112+15423739..15429165hypothetical protein
LOC_Os02g26280OsAffx.31892.5.S1_x_at1/112+15423739..15429165hypothetical protein
LOC_Os02g26280OsAffx.20733.1.S1_x_at1/112+15423739..15429165hypothetical protein
LOC_Os02g26290Os.6347.1.S1_at11/112+15430736..15431761expressed protein
LOC_Os02g26300Os.51701.1.S1_at11/112+15441358..15445923expressed protein
LOC_Os02g26310OsAffx.2759.1.S1_at11/112+15447076..15447835hypothetical protein
LOC_Os02g26310OsAffx.2759.1.S1_x_at11/112+15447076..15447835hypothetical protein
LOC_Os02g26320Os.55769.1.S1_at11/112+15453155..15454310Fasciclin-like arabinogalactan protein 10 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24431.1.S1_at--249--76719Chr12:14189818..14189837 (20 bp)
GGGTTGTCCCTGTAATATTCATATT
NONE
OsAffx.24431.1.S1_at--644--66320Chr12:14189818..14189839 (22 bp)
GTTGTCCCTGTAATATTCATATTTA
NONE
OsAffx.24431.1.S1_at--613--232Chr02:15426609..15426633 (25 bp)
ATATTTACATTCGAGTCCCTGTTCG
LOC_Os02g26280
OsAffx.24431.1.S1_at--474--6091NONE
GAGTCCCTGTTCGAGATTTGGTTGA
NONE
OsAffx.24431.1.S1_at--14--7251NONE
GTCCCTGTTCGAGATTTGGTTGAGA
NONE
OsAffx.24431.1.S1_at--579--691Chr02:15428725..15428749 (25 bp)
ATGACCATCAAGAAATGCTCCTCCC
LOC_Os02g26280
OsAffx.24431.1.S1_at--500--372Chr06:727701..728094 (25 bp)
ATCAAGAAATGCTCCTCCCTGGATG
NONE
OsAffx.24431.1.S1_at--809--2751Chr02:15428734..15428758 (25 bp)
AAGAAATGCTCCTCCCTGGATGTTG
LOC_Os02g26280
OsAffx.24431.1.S1_at--971--2271Chr02:15428737..15428761 (25 bp)
AAATGCTCCTCCCTGGATGTTGTGA
LOC_Os02g26280
OsAffx.24431.1.S1_at--145--631Chr02:15428739..15428763 (25 bp)
ATGCTCCTCCCTGGATGTTGTGATA
LOC_Os02g26280
OsAffx.24431.1.S1_at--1072--7391Chr02:15428758..15428992 (25 bp)
GTGATAGATAACGAGGTACTTGCTT
LOC_Os02g26280
Target Sequence 
GGGTTGTCCCTGTAATATTCATATTTACATTCGATTAATATTCATATTTACATTCGAGTCCCTGTTCGAGATTTGGTTGA
GAAACTTGAGTTGCCTACACAACCGCATCCTTATCCATATTACATCAAATGGTTCAACTCTTGTGGCATATGAGAACAAC
CAAGGTAATGAGGAGGAAGAGAAGAAAGACGAAGAGCAAAAAGACCTATCCATAGCTCCATACATGCTTGAGGAATGTTT
AATTGACCAAGCGCCTATAATTTCTAAAGATGAGAAAAAAGGTAATGATGATGAGAAAAAAGAAGGGGAATGTTGTGGTT
TTGCGACTACAAAGATTTCAGGATCCAACCATATGACCATCAAGAAATGCTCCTCCCTGGATGTTGTGATAGATAACGAG
GTACTTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24431.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis