Browse Element(s) Details


Os.51701.1.S1_at

Description gb:AK063459.1
DB_XREF= gi:32973477
TID=Os.51701.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51701 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-G10, full insert sequence.
FL= gb:AK063459.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2630011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26260NANA2+15416714..15416974hypothetical protein
LOC_Os02g26270NANA2+15419622..15423088retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g26280OsAffx.24431.1.S1_at9/112+15423739..15429165hypothetical protein
LOC_Os02g26280OsAffx.31892.1.S1_x_at3/112+15423739..15429165hypothetical protein
LOC_Os02g26280OsAffx.31892.3.S1_at2/112+15423739..15429165hypothetical protein
LOC_Os02g26280OsAffx.31892.5.S1_x_at1/112+15423739..15429165hypothetical protein
LOC_Os02g26280OsAffx.20733.1.S1_x_at1/112+15423739..15429165hypothetical protein
LOC_Os02g26290Os.6347.1.S1_at11/112+15430736..15431761expressed protein
LOC_Os02g26300Os.51701.1.S1_at11/112+15441358..15445923expressed protein
LOC_Os02g26310OsAffx.2759.1.S1_at11/112+15447076..15447835hypothetical protein
LOC_Os02g26310OsAffx.2759.1.S1_x_at11/112+15447076..15447835hypothetical protein
LOC_Os02g26320Os.55769.1.S1_at11/112+15453155..15454310Fasciclin-like arabinogalactan protein 10 precursor, putative, expressed
LOC_Os02g26330NANA2+15461305..15461963expressed protein
LOC_Os02g26349Os.49535.1.A1_at11/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26349Os.39411.1.A1_at1/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26349OsAffx.6362.1.S1_at1/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26349Os.45957.4.S1_x_at1/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51701.1.S1_at--645--9931Chr02:15443169..15443193 (25 bp)
TACGGTTTCAGAACACACAGCAAGT
LOC_Os02g26300
Os.51701.1.S1_at--92--9731Chr02:15443200..15443224 (25 bp)
TCAAGATAAGCTTGGCCCTGGCTTT
LOC_Os02g26300
Os.51701.1.S1_at--302--1031Chr02:15444982..15445001 (20 bp)
AGGTCTGCAGTTCCGATAGTCTTCA
LOC_Os02g26300
Os.51701.1.S1_at--282--1431Chr02:15445036..15445060 (25 bp)
AGAACCATTCTCAAAGGACTTACAG
LOC_Os02g26300
Os.51701.1.S1_at--5--8031Chr02:15445068..15445092 (25 bp)
GGAGGATTCTTCAGATCTATACGAT
LOC_Os02g26300
Os.51701.1.S1_at--721--2431Chr02:15445235..15445259 (25 bp)
AAAAGTGCGCCAATGTACATCACCG
LOC_Os02g26300
Os.51701.1.S1_at--1155--4311Chr02:15445273..15445297 (25 bp)
CCATTCAGTGGGTCTTTTGTATATA
LOC_Os02g26300
Os.51701.1.S1_at--728--9211Chr02:15445300..15445324 (25 bp)
TCCAGTGGGTGGTTCAGCCGCTAGA
LOC_Os02g26300
Os.51701.1.S1_at--725--1651Chr02:15445315..15445339 (25 bp)
AGCCGCTAGATCTCATGGGCGTTGG
LOC_Os02g26300
Os.51701.1.S1_at--589--7711Chr02:15445353..15445377 (25 bp)
GGTGGAGGTAACATTATCCCTATCT
LOC_Os02g26300
Os.51701.1.S1_at--564--4291Chr02:15445381..15445405 (25 bp)
CCTCTTACTCAGTACTGTAGCTCAG
LOC_Os02g26300
Target Sequence 
TACGGTTTCAGAACACACAGCAAGTTTATATTCAAGATAAGCTTGGCCCTGGCTTTGGTGAGGTCTGCAGTTCCGATAGT
CTTCAGAGGTGTACATCTAGCTATGGAAGGGATAATGTTAGAACCATTCTCAAAGGACTTACAGGACGTGGGGAGGATTC
TTCAGATCTATACGATTTTATTGAATGCAATCCAAGTTTGGATTATTCAAATTGGTGGACACAACGGAAGAAGTTTAAAA
AGTTTAAGGACCACAAATGGATAAGAAGCAAGAGACATTCTATGAGTAGACTGAGANCCTCAAAGGTATGGTTAAGATAA
AAGTGCGCCAATGTACATCACCGCCCCTGATGTTACCCATTCAGTGGGTCTTTTGTATATAGTTCCAGTGGGTGGTTCAG
CCGCTAGATCTCATGGGCGTTGGGCAGCCCAGTACCGGTGGAGGTAACATTATCCCTATCTTNCCCTCTTACTCAGTACT
GTAGCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51701.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis