Browse Element(s) Details


OsAffx.2759.1.S1_x_at

Description tigr:9630.m02478
TID=OsAffx.2759.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2631011/11hypothetical protein
LOC_Os06g456301/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26270NANA2+15419622..15423088retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g26280OsAffx.24431.1.S1_at9/112+15423739..15429165hypothetical protein
LOC_Os02g26280OsAffx.31892.1.S1_x_at3/112+15423739..15429165hypothetical protein
LOC_Os02g26280OsAffx.31892.3.S1_at2/112+15423739..15429165hypothetical protein
LOC_Os02g26280OsAffx.31892.5.S1_x_at1/112+15423739..15429165hypothetical protein
LOC_Os02g26280OsAffx.20733.1.S1_x_at1/112+15423739..15429165hypothetical protein
LOC_Os02g26290Os.6347.1.S1_at11/112+15430736..15431761expressed protein
LOC_Os02g26300Os.51701.1.S1_at11/112+15441358..15445923expressed protein
LOC_Os02g26310OsAffx.2759.1.S1_at11/112+15447076..15447835hypothetical protein
LOC_Os02g26310OsAffx.2759.1.S1_x_at11/112+15447076..15447835hypothetical protein
LOC_Os02g26320Os.55769.1.S1_at11/112+15453155..15454310Fasciclin-like arabinogalactan protein 10 precursor, putative, expressed
LOC_Os02g26330NANA2+15461305..15461963expressed protein
LOC_Os02g26349Os.49535.1.A1_at11/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26349Os.39411.1.A1_at1/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26349OsAffx.6362.1.S1_at1/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26349Os.45957.4.S1_x_at1/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2759.1.S1_x_at--399--5851Chr02:15447741..15447765 (25 bp)
GAGCCGCGGAGGTAGGCTGGTTGGA
LOC_Os02g26310
OsAffx.2759.1.S1_x_at--198--6031Chr02:15447684..15447708 (25 bp)
GAGAGGCGCACGCTGATGCGGTCAA
LOC_Os02g26310
OsAffx.2759.1.S1_x_at--522--4131Chr02:15447674..15447698 (25 bp)
CGCTGATGCGGTCAAGAGGCGGCGC
LOC_Os02g26310
OsAffx.2759.1.S1_x_at--1109--1311Chr02:15447660..15447684 (25 bp)
AGAGGCGGCGCGAAGGTGCAAAGGA
LOC_Os02g26310
OsAffx.2759.1.S1_x_at--572--4692Chr03:32427300..32427320 (21 bp)
TCGGTTTTATTCTGCCCACCCTATC
NONE
OsAffx.2759.1.S1_x_at--261--8631Chr02:15447296..15447320 (25 bp)
TGGTGGCTCTCAACCTCGCAAATAA
LOC_Os02g26310
OsAffx.2759.1.S1_x_at--67--8491Chr02:15447293..15447317 (25 bp)
TGGCTCTCAACCTCGCAAATAACAG
LOC_Os02g26310
OsAffx.2759.1.S1_x_at--992--1751Chr02:15447284..15447308 (25 bp)
ACCTCGCAAATAACAGCTTCGCCGG
LOC_Os02g26310
OsAffx.2759.1.S1_x_at--147--3892Chr06:27622761..27622784 (24 bp)
CTGTCGCTGGAGCTGTCGAACAACA
LOC_Os06g45630
OsAffx.2759.1.S1_x_at--45--2211Chr02:15447206..15447230 (25 bp)
ACAACAAGCTCACGGCGATCGACGC
LOC_Os02g26310
OsAffx.2759.1.S1_x_at--858--3851Chr02:15447131..15447155 (25 bp)
CTGAGATACTCCTCTACGGCAACAA
LOC_Os02g26310
Target Sequence 
GAGCCGCGGAGGTAGGCTGGTTGGAGGCGGCGCACGGGCGGCGATGGAGGCGGAGGCGAGAGGCGCACGCTGATGCGGTC
AAGAGGCGGCGCGAAGGTGCAAAGGAGGATGGGGATGGGGATGGGGACGGCGCACAGGAGGATGGGGATGTTCGGTTTTA
TTCTGCCCACCCTATCCCGGCGTCGCTGTCGAACGCCACGGCGCTGGTGGCTCTCAACCTCGCAAATAACAGCTTCGCCG
GGCAGGTGCCCGCCGAGATCGGCACGCTCTGCGCGCTGTCGCTGGAGCTGTCGAACAACAAGCTCACGGCGATCGACGCC
GGCGGCGGCTGGGAGTTCGTGGACAACCTGACCAAATGCAGCGCCTTGGCTGAGATACTCCTCTACGGCAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2759.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis