Browse Element(s) Details


OsAffx.31892.1.S1_x_at

Description tigr:9638.m01230
TID=OsAffx.31892.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1393011/11hypothetical protein
LOC_Os12g247407/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g180805/11retrotransposon, putative, centromere-specific
LOC_Os06g290004/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g158304/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g198904/11retrotransposon protein, putative, LINE subclass
LOC_Os08g169003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g262803/11hypothetical protein
LOC_Os02g248902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g197602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g403602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g182702/11retrotransposon, putative, centromere-specific
LOC_Os11g204002/11retrotransposon protein, putative, unclassified, expressed
LOC_Os04g277302/11transposon protein, putative, Mutator sub-class
LOC_Os07g203701/11retrotransposon protein, putative, unclassified
LOC_Os05g209501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g361801/11retrotransposon, putative, centromere-specific
LOC_Os11g238001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g216201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g186801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g304501/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g240701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g200601/11hypothetical protein
LOC_Os12g264901/11hypothetical protein
LOC_Os09g116801/11hypothetical protein
LOC_Os05g127001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g13880OsAffx.8353.1.S1_at11/1110+7309083..7310097hypothetical protein
LOC_Os10g13900OsAffx.30410.1.S1_at10/1110+7318147..7319931transposon protein, putative, unclassified
LOC_Os10g13914Os.46709.1.S1_x_at11/1110+7322725..7329235expressed protein
LOC_Os10g13914Os.39297.1.S1_at11/1110+7322725..7329235expressed protein
LOC_Os10g13930OsAffx.31892.1.S1_x_at11/1110+7334816..7336547hypothetical protein
LOC_Os10g13930OsAffx.31892.5.S1_x_at3/1110+7334816..7336547hypothetical protein
LOC_Os10g13930OsAffx.31892.5.S1_at3/1110+7334816..7336547hypothetical protein
LOC_Os10g13940Os.46062.1.S1_at11/1110+7339186..7345035MATE efflux family protein, putative, expressed
LOC_Os10g13950OsAffx.30032.1.S1_at11/1110+7345723..7347994hypothetical protein
LOC_Os10g13950OsAffx.16416.1.S1_x_at1/1110+7345723..7347994hypothetical protein
LOC_Os10g13960OsAffx.20598.1.S1_at11/1110+7349743..7354208retrotransposon protein, putative, unclassified, expressed
LOC_Os10g13970Os.48032.1.S1_at11/1110+7357220..7360763Leucine Rich Repeat family protein, expressed
LOC_Os10g13970OsAffx.31524.1.S1_x_at1/1110+7357220..7360763Leucine Rich Repeat family protein, expressed
LOC_Os10g13970OsAffx.19417.2.S1_x_at1/1110+7357220..7360763Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31892.1.S1_x_at--45--49920Chr12:15481632..15481656 (25 bp)
GCATCCTCATCCATATTACATCAAA
LOC_Os12g26490
OsAffx.31892.1.S1_x_at--566--7892Chr10:7336027..7336279 (25 bp)
GGTTCAACTCTTGTGATAATCTTCA
LOC_Os10g13930
OsAffx.31892.1.S1_x_at--714--4515Chr12:14190983..14191007 (25 bp)
ATCGATGAGATTTTCAGAGATACCA
LOC_Os12g24740
OsAffx.31892.1.S1_x_at--276--6053Chr12:14190999..14191023 (25 bp)
GAGATACCAGGAAAGATGCTATTGT
LOC_Os12g24740
OsAffx.31892.1.S1_x_at--1032--2792Chr12:14191011..14191035 (25 bp)
AAGATGCTATTGTGATGTATTCAAC
LOC_Os12g24740
OsAffx.31892.1.S1_x_at--63--4111Chr10:7335915..7335939 (25 bp)
CGAACATATTGTTGTGCCTATTGCT
LOC_Os10g13930
OsAffx.31892.1.S1_x_at--119--2311Chr10:11039289..11039312 (24 bp)
ATATTGTTGTGCCTATTGCTTTGGA
NONE
OsAffx.31892.1.S1_x_at--754--44511Chr10:11039298..11039321 (24 bp)
GCCTATTGCTTTGGATACTAATATC
NONE
OsAffx.31892.1.S1_x_at--1064--9732Chr12:14191087..14191111 (25 bp)
TAATATCTTGCAGGCATCTGAGAAC
LOC_Os12g24740
OsAffx.31892.1.S1_x_at--601--49714Chr12:14191100..14191124 (25 bp)
GCATCTGAGAACAACCAAGGTAATG
LOC_Os12g24740
OsAffx.31892.1.S1_x_at--1125--4554Chr12:14191205..14191227 (23 bp)
GCGCCTACAATTTCTGAAGATGACC
LOC_Os12g24740
Target Sequence 
GCATCCTCATCCATATTACATCAAATGGTTCAACTCTTGTGATAATCTTCAAAAGATGAAGAATGGAATCGATGAGATTT
TCAGAGATACCAGGAAAGATGCTATTGTGATGTATTCAACCAAGTCTGAATTACAAAACGAACATATTGTTGTGCCTATT
GCTTTGGATACTAATATCTTGCAGGCATCTGAGAACAACCAAGGTAATGAGGTGGAAGAGAAGAAAGACGAAGAGCAAAA
AGATCTATCCATAGCTCCATGCATGCTTGAGGAATGTTTAATTGACCAAGCGCCTACAATTTCTGAAGATGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31892.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis