Browse Element(s) Details


Os.46709.1.S1_x_at

Description gb:NM_195467.1
DB_XREF= gi:37532293
TID=Os.46709.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46709 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1004_F02.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1004_F02.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1391411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g13870OsAffx.28841.1.S1_at6/1110+7303051..7304424expressed protein
LOC_Os10g13870OsAffx.27597.1.S1_at1/1110+7303051..7304424expressed protein
LOC_Os10g13880OsAffx.8353.1.S1_at11/1110+7309083..7310097hypothetical protein
LOC_Os10g13900OsAffx.30410.1.S1_at10/1110+7318147..7319931transposon protein, putative, unclassified
LOC_Os10g13914Os.46709.1.S1_x_at11/1110+7322725..7329235expressed protein
LOC_Os10g13914Os.39297.1.S1_at11/1110+7322725..7329235expressed protein
LOC_Os10g13930OsAffx.31892.1.S1_x_at11/1110+7334816..7336547hypothetical protein
LOC_Os10g13930OsAffx.31892.5.S1_x_at3/1110+7334816..7336547hypothetical protein
LOC_Os10g13930OsAffx.31892.5.S1_at3/1110+7334816..7336547hypothetical protein
LOC_Os10g13940Os.46062.1.S1_at11/1110+7339186..7345035MATE efflux family protein, putative, expressed
LOC_Os10g13950OsAffx.30032.1.S1_at11/1110+7345723..7347994hypothetical protein
LOC_Os10g13950OsAffx.16416.1.S1_x_at1/1110+7345723..7347994hypothetical protein
LOC_Os10g13960OsAffx.20598.1.S1_at11/1110+7349743..7354208retrotransposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46709.1.S1_x_at--319--2351Chr10:7322789..7322813 (25 bp)
AAAGCAAGAAGCTATCTGCACGCGT
LOC_Os10g13914
Os.46709.1.S1_x_at--195--2751Chr10:7322794..7322818 (25 bp)
AAGAAGCTATCTGCACGCGTGGCAT
LOC_Os10g13914
Os.46709.1.S1_x_at--208--2711Chr10:7322797..7322821 (25 bp)
AAGCTATCTGCACGCGTGGCATGCA
LOC_Os10g13914
Os.46709.1.S1_x_at--586--5091Chr10:7322806..7322830 (25 bp)
GCACGCGTGGCATGCAGCTGCTCCT
LOC_Os10g13914
Os.46709.1.S1_x_at--892--1371Chr10:7322861..7322885 (25 bp)
AGAGCCGGCTGCAGCGATATCGACG
LOC_Os10g13914
Os.46709.1.S1_x_at--996--9031Chr10:7322870..7322894 (25 bp)
TGCAGCGATATCGACGATGCCCATG
LOC_Os10g13914
Os.46709.1.S1_x_at--883--6491Chr10:7322876..7322900 (25 bp)
GATATCGACGATGCCCATGGAGCTC
LOC_Os10g13914
Os.46709.1.S1_x_at--445--1872Chr10:7322883..7322907 (25 bp)
ACGATGCCCATGGAGCTCTACTTCT
LOC_Os10g13914
Os.46709.1.S1_x_at--176--4631Chr10:7322941..7322965 (25 bp)
GCGAGGAGCCGGTTTCGACCGTGGT
LOC_Os10g13914
Os.46709.1.S1_x_at--497--10291Chr10:7322953..7322977 (25 bp)
TTTCGACCGTGGTCGTGTCCGGCCA
LOC_Os10g13914
Os.46709.1.S1_x_at--960--8691Chr10:7322968..7322992 (25 bp)
TGTCCGGCCAGGTCGCCTGCGAGCT
LOC_Os10g13914
Target Sequence 
AAAGCAAGAAGCTATCTGCACGCGTGGCATGCAGCTGCTCCTCCTGCTGCTCGCCGCCGTCTTGGTGGCGGCAGAGCCGG
CTGCAGCGATATCGACGATGCCCATGGAGCTCTACTTCTCNCNGGGGGAGCTCGCGCGTATTGNNCNGGTACGGCGAGGA
GCCGGTTTCGACCGTGGTCGTGTCCGGCCAGGTCGCCTGCGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46709.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis