Browse Element(s) Details


OsAffx.8353.1.S1_at

Description gb:NM_195464.1
DB_XREF= gi:37532287
TID=OsAffx.8353.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1004_F02.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1388011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g13830Os.46553.1.S1_at11/1110+7280113..7284443ABC transporter family protein, putative, expressed
LOC_Os10g13830Os.46553.2.S1_x_at11/1110+7280113..7284443ABC transporter family protein, putative, expressed
LOC_Os10g13840OsAffx.30408.1.S1_at11/1110+7286322..7291035hypothetical protein
LOC_Os10g13850Os.46081.1.S1_at11/1110+7294503..7295642expressed protein
LOC_Os10g13870OsAffx.28841.1.S1_at6/1110+7303051..7304424expressed protein
LOC_Os10g13870OsAffx.27597.1.S1_at1/1110+7303051..7304424expressed protein
LOC_Os10g13880OsAffx.8353.1.S1_at11/1110+7309083..7310097hypothetical protein
LOC_Os10g13900OsAffx.30410.1.S1_at10/1110+7318147..7319931transposon protein, putative, unclassified
LOC_Os10g13914Os.46709.1.S1_x_at11/1110+7322725..7329235expressed protein
LOC_Os10g13914Os.39297.1.S1_at11/1110+7322725..7329235expressed protein
LOC_Os10g13930OsAffx.31892.1.S1_x_at11/1110+7334816..7336547hypothetical protein
LOC_Os10g13930OsAffx.31892.5.S1_x_at3/1110+7334816..7336547hypothetical protein
LOC_Os10g13930OsAffx.31892.5.S1_at3/1110+7334816..7336547hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8353.1.S1_at--398--9531Chr10:7309987..7310007 (21 bp)
TCTAGATCAGCTAAGCCAGGTTCAC
LOC_Os10g13880
OsAffx.8353.1.S1_at--800--4831Chr10:7309525..7309998 (25 bp)
GCTAAGCCAGGTTCACAGTGCTCTT
LOC_Os10g13880
OsAffx.8353.1.S1_at--1144--3451Chr10:7309510..7309534 (25 bp)
CAGTGCTCTTCCTGTCGTTGTGAAG
LOC_Os10g13880
OsAffx.8353.1.S1_at--981--10651Chr10:7309502..7309526 (25 bp)
TTCCTGTCGTTGTGAAGCAGCACTT
LOC_Os10g13880
OsAffx.8353.1.S1_at--364--2711Chr10:7309488..7309512 (25 bp)
AAGCAGCACTTCCAGTAATGGTAGT
LOC_Os10g13880
OsAffx.8353.1.S1_at--802--9771Chr10:7309473..7309497 (25 bp)
TAATGGTAGTGCTCAGCGCCTCTGA
LOC_Os10g13880
OsAffx.8353.1.S1_at--598--9091Chr10:7309464..7309488 (25 bp)
TGCTCAGCGCCTCTGATTTTTGCTT
LOC_Os10g13880
OsAffx.8353.1.S1_at--539--7051Chr10:7309431..7309455 (25 bp)
GTAACTTGCACAAGGCATCCCGAGT
LOC_Os10g13880
OsAffx.8353.1.S1_at--30--2231Chr10:7309422..7309446 (25 bp)
ACAAGGCATCCCGAGTCCTGATGAT
LOC_Os10g13880
OsAffx.8353.1.S1_at--1097--6091Chr10:7309410..7309434 (25 bp)
GAGTCCTGATGATCCCAGTTTTGTA
LOC_Os10g13880
OsAffx.8353.1.S1_at--175--6811Chr10:7309396..7309417 (22 bp)
GTTTTGTATCAACTGCTGCAAGATG
LOC_Os10g13880
Target Sequence 
TCTAGATCAGCTAAGCCAGGTTCACAGTGCTCTTCCTGTCGTTGTGAAGCAGCACTTCCAGTAATGGTAGTGCTCAGCGC
CTCTGATTTTTGCTTCAAAAATTGTAACTTGCACAAGGCATCCCGAGTCCTGATGATCCCAGTTTTGTATCAACTGCTGC
AAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis