Browse Element(s) Details


Os.46553.2.S1_x_at

Description gb:NM_195459.1
DB_XREF= gi:37532277
TID=Os.46553.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46553 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ABC transporter (OSJNBb0048O22.8), mRNA.
PROD=putative ABC transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1383011/11ABC transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g13780OsAffx.8356.1.S1_x_at11/1110+7256708..7257714hypothetical protein
LOC_Os10g13780OsAffx.8356.1.S1_at11/1110+7256708..7257714hypothetical protein
LOC_Os10g13790OsAffx.20604.1.S1_at11/1110+7257955..7258896hypothetical protein
LOC_Os10g13800Os.25439.1.S1_at11/1110+7261230..7264144Ufm1-conjugating enzyme 1, putative, expressed
LOC_Os10g13800Os.25439.2.S1_x_at11/1110+7261230..7264144Ufm1-conjugating enzyme 1, putative, expressed
LOC_Os10g13800Os.25439.2.S1_at11/1110+7261230..7264144Ufm1-conjugating enzyme 1, putative, expressed
LOC_Os10g13810Os.31415.1.S1_at11/1110+7264476..7268612Glycosyltransferase family 43 protein, expressed
LOC_Os10g13810OsAffx.8676.1.S1_at1/1110+7264476..7268612Glycosyltransferase family 43 protein, expressed
LOC_Os10g13820OsAffx.6667.1.S1_at6/1110+7269688..7271350hypothetical protein
LOC_Os10g13820Os.27691.2.S1_at1/1110+7269688..7271350hypothetical protein
LOC_Os10g13830Os.46553.1.S1_at11/1110+7280113..7284443ABC transporter family protein, putative, expressed
LOC_Os10g13830Os.46553.2.S1_x_at11/1110+7280113..7284443ABC transporter family protein, putative, expressed
LOC_Os10g13840OsAffx.30408.1.S1_at11/1110+7286322..7291035hypothetical protein
LOC_Os10g13850Os.46081.1.S1_at11/1110+7294503..7295642expressed protein
LOC_Os10g13870OsAffx.28841.1.S1_at6/1110+7303051..7304424expressed protein
LOC_Os10g13870OsAffx.27597.1.S1_at1/1110+7303051..7304424expressed protein
LOC_Os10g13880OsAffx.8353.1.S1_at11/1110+7309083..7310097hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015692biological_processlead ion transport
GO:0005886cellular_componentplasma membrane
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46553.2.S1_x_at--1038--2491Chr10:7283124..7283148 (25 bp)
AACATGTACTCGTCATTCCCATATG
LOC_Os10g13830
Os.46553.2.S1_x_at--914--251Chr10:7283144..7283168 (25 bp)
ATATGCTGCAGCTCAGGTTTACCAC
LOC_Os10g13830
Os.46553.2.S1_x_at--879--7851Chr10:7283159..7283245 (25 bp)
GGTTTACCACGGTCTTGTGGAGATC
LOC_Os10g13830
Os.46553.2.S1_x_at--571--8051Chr10:7283239..7283263 (25 bp)
GGAGATCCCATATATTGCAGTTCAG
LOC_Os10g13830
Os.46553.2.S1_x_at--323--7811Chr10:7283276..7283300 (25 bp)
GGTCTCATTACTTACTTCATGGTCA
LOC_Os10g13830
Os.46553.2.S1_x_at--861--2111Chr10:7283571..7283595 (25 bp)
ACATGGCATCTGTGGTATCCTCAGC
LOC_Os10g13830
Os.46553.2.S1_x_at--1101--7851Chr10:7283584..7283608 (25 bp)
GGTATCCTCAGCGTTTTACTCATTA
LOC_Os10g13830
Os.46553.2.S1_x_at--719--8191Chr10:7283610..7283634 (25 bp)
GGAATCTTCTTTCTGGGTTCTTAAT
LOC_Os10g13830
Os.46553.2.S1_x_at--494--7871Chr10:7283982..7284006 (25 bp)
GGTTTTATTATATCTGCCCAGTGGC
LOC_Os10g13830
Os.46553.2.S1_x_at--72--3831Chr10:7284014..7284038 (25 bp)
CTGCGAGGCGTCATTACATCACAAT
LOC_Os10g13830
Os.46553.2.S1_x_at--652--5751Chr10:7284082..7284106 (25 bp)
GACGGTGCATGAATTCCTCCAGCAA
LOC_Os10g13830
Target Sequence 
AACATGTACTCGTCATTCCCATATGCTGCAGCTCAGGTTTACCACGGTCTTGTGGAGATCCCATATATTGCAGTTCAGAC
ACTAATATTTGGTCTCATTACTTACTTCATGGTCAATTATGAGCGGAACATAAGAAAATTGGTCTTGTACCTTATTTACA
TGTTCCTTACTTTTACCTACTTCACGTTTTATGGAATGGTGGCAGTAGGCTTGACACCTACTCAACACATGGCATCTGTG
GTATCCTCAGCGTTTTACTCATTATGGAATCTTCTTTCTGGGTTCTTAATCCCACAATCTAGAATTCCAGGATGGTGGAT
CTGGTTTTATTATATCTGCCCAGTGGCATGGACCCTGCGAGGCGTCATTACATCACAATTAGGTGACGTGGACACGAGGA
TAGTGGGCCCTGGTTTCGACGGGACGGTGCATGAATTCCTCCAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46553.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis