Browse Element(s) Details


OsAffx.20604.1.S1_at

Description tigr:9638.m01216
TID=OsAffx.20604.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1379011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g13740NANA10+7232752..7235090retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g13760NANA10+7241671..7245347hypothetical protein
LOC_Os10g13770Os.27088.1.A1_x_at4/1110+7247509..7254547Transposable element protein, putative, MuDR
LOC_Os10g13770Os.46012.2.S1_x_at4/1110+7247509..7254547Transposable element protein, putative, MuDR
LOC_Os10g13770Os.46012.3.S1_x_at1/1110+7247509..7254547Transposable element protein, putative, MuDR
LOC_Os10g13770OsAffx.12167.1.A1_at1/1110+7247509..7254547Transposable element protein, putative, MuDR
LOC_Os10g13780OsAffx.8356.1.S1_x_at11/1110+7256708..7257714hypothetical protein
LOC_Os10g13780OsAffx.8356.1.S1_at11/1110+7256708..7257714hypothetical protein
LOC_Os10g13790OsAffx.20604.1.S1_at11/1110+7257955..7258896hypothetical protein
LOC_Os10g13800Os.25439.1.S1_at11/1110+7261230..7264144Ufm1-conjugating enzyme 1, putative, expressed
LOC_Os10g13800Os.25439.2.S1_x_at11/1110+7261230..7264144Ufm1-conjugating enzyme 1, putative, expressed
LOC_Os10g13800Os.25439.2.S1_at11/1110+7261230..7264144Ufm1-conjugating enzyme 1, putative, expressed
LOC_Os10g13810Os.31415.1.S1_at11/1110+7264476..7268612Glycosyltransferase family 43 protein, expressed
LOC_Os10g13810OsAffx.8676.1.S1_at1/1110+7264476..7268612Glycosyltransferase family 43 protein, expressed
LOC_Os10g13820OsAffx.6667.1.S1_at6/1110+7269688..7271350hypothetical protein
LOC_Os10g13820Os.27691.2.S1_at1/1110+7269688..7271350hypothetical protein
LOC_Os10g13830Os.46553.1.S1_at11/1110+7280113..7284443ABC transporter family protein, putative, expressed
LOC_Os10g13830Os.46553.2.S1_x_at11/1110+7280113..7284443ABC transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20604.1.S1_at--181--1311Chr10:7258525..7258549 (25 bp)
AGATGAGCATCAGACCACGGGACCA
LOC_Os10g13790
OsAffx.20604.1.S1_at--739--1911Chr10:7258509..7258533 (25 bp)
ACGGGACCAGTTTACTTGCCAGGAG
LOC_Os10g13790
OsAffx.20604.1.S1_at--350--1511Chr10:7258405..7258429 (25 bp)
AGCAGCTTCGACTCTAGCACCAGTT
LOC_Os10g13790
OsAffx.20604.1.S1_at--1118--2611Chr10:7258250..7258349 (25 bp)
AACCGCAACATGCTGTTCAACAGAC
LOC_Os10g13790
OsAffx.20604.1.S1_at--355--8071Chr10:7258216..7258240 (25 bp)
GGAGCAAGCGGTCCAGCCGATTCAA
LOC_Os10g13790
OsAffx.20604.1.S1_at--558--2151Chr10:7258192..7258216 (25 bp)
ACAGCAAACAGTCCAGCCGATTCAG
LOC_Os10g13790
OsAffx.20604.1.S1_at--248--1931Chr10:7258161..7258185 (25 bp)
ACGGTGCAGCAGATGCCGACTGGAT
LOC_Os10g13790
OsAffx.20604.1.S1_at--1115--9151Chr10:7258148..7258172 (25 bp)
TGCCGACTGGATTAAGGACACCTAA
LOC_Os10g13790
OsAffx.20604.1.S1_at--125--8151Chr10:7258133..7258157 (25 bp)
GGACACCTAATAATCGGCAGACACA
LOC_Os10g13790
OsAffx.20604.1.S1_at--224--2851Chr10:7258094..7258118 (25 bp)
AAGTCATCCCTGAGCATATGGTACA
LOC_Os10g13790
OsAffx.20604.1.S1_at--1107--1251Chr10:7258057..7258081 (25 bp)
AGATCAGTCGGTTGCAGCCCAAATT
LOC_Os10g13790
Target Sequence 
AGATGAGCATCAGACCACGGGACCAGTTTACTTGCCAGGAGTTGTCTTCCCAAACTATAAGAGCTTAGTGACAAGTAATC
AACAGAATACTTCCAATGCACCACAAGTTCAGCCGACGGCAGCAGCTTCGACTCTAGCACCAGTTGCGCCATCAACGGCA
CAAAAGCAGACAATTAATCCTCGTCTCTTGTCCAGAGAGCAACCGCAACATGCTGTTCAACAGACGCCCCCAAGGGAGCA
AGCGGTCCAGCCGATTCAACAGCAAACAGTCCAGCCGATTCAGCAGCAGACGGTGCAGCAGATGCCGACTGGATTAAGGA
CACCTAATAATCGGCAGACACATCAAAATGTGACTCAAGTCATCCCTGAGCATATGGTACACACGGTACAACCAGATCAG
TCGGTTGCAGCCCAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20604.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis