Browse Element(s) Details


OsAffx.12167.1.A1_at

Description tigr:9630.m02262
TID=OsAffx.12167.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g137701/11Transposable element protein, putative, MuDR
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g13730NANA10+7222925..7224950Transposable element protein, putative, Retrotrans_gag
LOC_Os10g13740NANA10+7232752..7235090retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g13760NANA10+7241671..7245347hypothetical protein
LOC_Os10g13770Os.27088.1.A1_x_at4/1110+7247509..7254547Transposable element protein, putative, MuDR
LOC_Os10g13770Os.46012.2.S1_x_at4/1110+7247509..7254547Transposable element protein, putative, MuDR
LOC_Os10g13770Os.46012.3.S1_x_at1/1110+7247509..7254547Transposable element protein, putative, MuDR
LOC_Os10g13770OsAffx.12167.1.A1_at1/1110+7247509..7254547Transposable element protein, putative, MuDR
LOC_Os10g13780OsAffx.8356.1.S1_x_at11/1110+7256708..7257714hypothetical protein
LOC_Os10g13780OsAffx.8356.1.S1_at11/1110+7256708..7257714hypothetical protein
LOC_Os10g13790OsAffx.20604.1.S1_at11/1110+7257955..7258896hypothetical protein
LOC_Os10g13800Os.25439.1.S1_at11/1110+7261230..7264144Ufm1-conjugating enzyme 1, putative, expressed
LOC_Os10g13800Os.25439.2.S1_x_at11/1110+7261230..7264144Ufm1-conjugating enzyme 1, putative, expressed
LOC_Os10g13800Os.25439.2.S1_at11/1110+7261230..7264144Ufm1-conjugating enzyme 1, putative, expressed
LOC_Os10g13810Os.31415.1.S1_at11/1110+7264476..7268612Glycosyltransferase family 43 protein, expressed
LOC_Os10g13810OsAffx.8676.1.S1_at1/1110+7264476..7268612Glycosyltransferase family 43 protein, expressed
LOC_Os10g13820OsAffx.6667.1.S1_at6/1110+7269688..7271350hypothetical protein
LOC_Os10g13820Os.27691.2.S1_at1/1110+7269688..7271350hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12167.1.A1_at--474--9951Chr02:14082822..14082846 (25 bp)
TACGCCTAACCTGCTCAGTGGGATA
NONE
OsAffx.12167.1.A1_at--324--3831Chr02:14082719..14082743 (25 bp)
CTGCGTCGGCTGTGTCACCTGAGGT
NONE
OsAffx.12167.1.A1_at--323--61533Chr11:7460403..7460427 (25 bp)
GAGGTGCTGCGTGCCAGTAATCCAT
NONE
OsAffx.12167.1.A1_at--560--10034Chr12:18504688..18504709 (22 bp)
TAGTTCCCCTTGAGGAGGCTCAGTG
NONE
OsAffx.12167.1.A1_at--545--5332Chr10:7241749..7241773 (25 bp)
GAAGTCCTCAACGAATGCTGTGCGA
NONE
OsAffx.12167.1.A1_at--276--1191Chr02:14082608..14082632 (25 bp)
AGTAGGCATTCCATGATACGTCGAT
NONE
OsAffx.12167.1.A1_at--552--8811Chr02:14082595..14082619 (25 bp)
TGATACGTCGATGCCGAACCGTACT
NONE
OsAffx.12167.1.A1_at--1085--5431Chr02:14082317..14082604 (25 bp)
GAACCGTACTCATCGTCTGATCTAG
NONE
OsAffx.12167.1.A1_at--1010--7171NONE
GTCTGATCTAGCTTTCTCTAAACCG
NONE
OsAffx.12167.1.A1_at--152--9832Chr10:7249326..7249350 (25 bp)
TAAACCGATTGAGGAGGACCACATC
LOC_Os10g13770
OsAffx.12167.1.A1_at--569--511Chr02:14080867..14080891 (25 bp)
ATCGTCACCATTGCAGTCGCCAGTG
NONE
Target Sequence 
TACGCCTAACCTGCTCAGTGGGATAAGTCAAATTATCAGGGGGGTGCCTCTCTCTTGCTGCCTGCTGTGGTGTCACATTG
GGAGCCTGAATGGCCCCCATCTCCTGCGTCGGCTGTGTCACCTGAGGTGCTGCGTGCCAGTAATCCATCCCTAGTTCCCC
TTGAGGAGGCTCAGTGGAAAAGAAGTCCTCAACGAATGCTGTGCGAGGGGAGTAAGTAGGCATTCCATGATACGTCGATG
CCGAACCGTACTCATCGTCTGATCTAGCTTTCTCTAAACCGATTGAGGAGGACCACATCGCCATCGTCACCATTGCAGTC
GCCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12167.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis