Browse Element(s) Details


OsAffx.16416.1.S1_x_at

Description tigr:9635.m02503
TID=OsAffx.16416.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2605011/11hypothetical protein
LOC_Os12g297141/11hypothetical protein
LOC_Os10g139501/11hypothetical protein
LOC_Os06g275201/11hypothetical protein
LOC_Os12g297301/11hypothetical protein
LOC_Os07g241401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26000Os.27775.1.A1_at11/117+14914349..14918754F-box domain containing protein, expressed
LOC_Os07g26010OsAffx.5444.1.S1_x_at10/117+14920757..14921624hypothetical protein
LOC_Os07g26020OsAffx.5445.1.S1_at10/117+14923630..14930932hypothetical protein
LOC_Os07g26020OsAffx.20631.1.S1_x_at7/117+14923630..14930932hypothetical protein
LOC_Os07g26020Os.49936.2.A1_at1/117+14923630..14930932hypothetical protein
LOC_Os07g26020OsAffx.28918.4.S1_at1/117+14923630..14930932hypothetical protein
LOC_Os07g26020Os.33601.3.S1_x_at1/117+14923630..14930932hypothetical protein
LOC_Os07g26030OsAffx.30350.1.S1_at2/117+14931314..14934464retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26040NANA7+14934845..14937265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26050OsAffx.16416.1.S1_x_at11/117+14941372..14941709hypothetical protein
LOC_Os07g26050OsAffx.16416.1.S1_at11/117+14941372..14941709hypothetical protein
LOC_Os07g26060NANA7+14945128..14945693hypothetical protein
LOC_Os07g26070Os.47463.1.S1_x_at4/117+14958505..14961706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26070Os.14491.2.S1_x_at3/117+14958505..14961706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26080Os.41248.4.S1_x_at1/117+14964274..14966590transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16416.1.S1_x_at--276--371Chr07:14941652..14941676 (25 bp)
ATCATGGTCCAATTACGCGTAGTCG
LOC_Os07g26050
OsAffx.16416.1.S1_x_at--481--9631Chr07:14941651..14941675 (25 bp)
TCATGGTCCAATTACGCGTAGTCGT
LOC_Os07g26050
OsAffx.16416.1.S1_x_at--882--691Chr07:14941649..14941673 (25 bp)
ATGGTCCAATTACGCGTAGTCGTGC
LOC_Os07g26050
OsAffx.16416.1.S1_x_at--379--7271Chr07:14941646..14941670 (25 bp)
GTCCAATTACGCGTAGTCGTGCTAG
LOC_Os07g26050
OsAffx.16416.1.S1_x_at--1101--4371Chr07:14941644..14941668 (25 bp)
CCAATTACGCGTAGTCGTGCTAGGA
LOC_Os07g26050
OsAffx.16416.1.S1_x_at--70--3151Chr07:14941642..14941666 (25 bp)
AATTACGCGTAGTCGTGCTAGGAAT
LOC_Os07g26050
OsAffx.16416.1.S1_x_at--78--9951Chr07:14941639..14941663 (25 bp)
TACGCGTAGTCGTGCTAGGAATATA
LOC_Os07g26050
OsAffx.16416.1.S1_x_at--241--4651Chr07:14941636..14941660 (25 bp)
GCGTAGTCGTGCTAGGAATATACAA
LOC_Os07g26050
OsAffx.16416.1.S1_x_at--158--1151Chr07:14941632..14941656 (25 bp)
AGTCGTGCTAGGAATATACAACAAG
LOC_Os07g26050
OsAffx.16416.1.S1_x_at--1070--338Chr07:18126945..18127052 (25 bp)
ATACAACAAGAGGTTTACGCCCGAG
NONE
OsAffx.16416.1.S1_x_at--321--2091Chr07:14941438..14941462 (25 bp)
ACATGCCCAACCAACAGCTGTTTAC
LOC_Os07g26050
Target Sequence 
ATCATGGTCCAATTACGCGTAGTCGTGCTAGGAATATACAACAAGAGGTTTACGCCCGAGGACATCATCACTACGCCAAG
GAAGATGGGTTATGTTGAGAACGACAAGGGTTACATCGAGGAGGAATCAGCACATGCCCAACCAACAGCTGTTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16416.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis