Browse Element(s) Details


Os.27775.1.A1_at

Description gb:AK068559.1
DB_XREF= gi:32978576
TID=Os.27775.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27775 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013152M20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152M20, full insert sequence.
FL= gb:AK068559.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2600011/11F-box domain containing protein, expressed
LOC_Os07g229103/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25950OsAffx.17842.1.S1_at3/117+14889175..14891290retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g25960Os.32823.2.S1_s_at1/117+14898193..14899748expressed protein
LOC_Os07g25970NANA7+14900416..14903096hypothetical protein
LOC_Os07g25980NANA7+14905316..14905935retrotransposon protein, putative, unclassified
LOC_Os07g25990NANA7+14908297..14909779retrotransposon protein, putative, unclassified
LOC_Os07g26000Os.27775.1.A1_at11/117+14914349..14918754F-box domain containing protein, expressed
LOC_Os07g26010OsAffx.5444.1.S1_x_at10/117+14920757..14921624hypothetical protein
LOC_Os07g26020OsAffx.5445.1.S1_at10/117+14923630..14930932hypothetical protein
LOC_Os07g26020OsAffx.20631.1.S1_x_at7/117+14923630..14930932hypothetical protein
LOC_Os07g26020Os.49936.2.A1_at1/117+14923630..14930932hypothetical protein
LOC_Os07g26020OsAffx.28918.4.S1_at1/117+14923630..14930932hypothetical protein
LOC_Os07g26020Os.33601.3.S1_x_at1/117+14923630..14930932hypothetical protein
LOC_Os07g26030OsAffx.30350.1.S1_at2/117+14931314..14934464retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26040NANA7+14934845..14937265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26050OsAffx.16416.1.S1_x_at11/117+14941372..14941709hypothetical protein
LOC_Os07g26050OsAffx.16416.1.S1_at11/117+14941372..14941709hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27775.1.A1_at--372--9052Chr07:14917614..14917638 (25 bp)
TGCAGTTCTGCAACTAGCATATTTT
LOC_Os07g26000
Os.27775.1.A1_at--879--4951Chr07:14917630..14917654 (25 bp)
GCATATTTTTCGGAAGCTGCTCCGT
LOC_Os07g26000
Os.27775.1.A1_at--399--2691Chr07:14917643..14917667 (25 bp)
AAGCTGCTCCGTTTTTGGTGGACCT
LOC_Os07g26000
Os.27775.1.A1_at--33--10451Chr07:14918236..14918260 (25 bp)
TTAGATTTTTACGAGTCCCGTCCTG
LOC_Os07g26000
Os.27775.1.A1_at--1072--1131Chr07:14918249..14918273 (25 bp)
AGTCCCGTCCTGCAAGAGACGTGAT
LOC_Os07g26000
Os.27775.1.A1_at--491--5992Chr07:14918264..14918288 (25 bp)
GAGACGTGATTATGAATCGCCCTCA
LOC_Os07g26000
Os.27775.1.A1_at--704--9331Chr07:14918280..14918304 (25 bp)
TCGCCCTCACTACAGTCTCAAGAGA
LOC_Os07g26000
Os.27775.1.A1_at--1070--9052Chr07:14918308..14918332 (25 bp)
TGCATAACCGGATTCAATGGCAATG
LOC_Os07g26000
Os.27775.1.A1_at--671--2952Chr07:14918485..14918509 (25 bp)
AATGGCCTACTTGTAATTCTATAAC
LOC_Os07g26000
Os.27775.1.A1_at--908--1211Chr07:14918516..14918540 (25 bp)
AGTTATGCATTCTGTTTTTCTCAAT
LOC_Os07g26000
Os.27775.1.A1_at--314--7411Chr07:14918563..14918587 (25 bp)
GTGATATATTTACTTGCCCTTTAAC
LOC_Os07g26000
Target Sequence 
TGCAGTTCTGCAACTAGCATATTTTTCGGAAGCTGCTCCGTTTTTGGTGGACCTTCATTTGGATATGCTGTGTTTAGATT
TTTACGAGTCCCGTCCTGCAAGAGACGTGATTATGAATCGCCCTCACTACAGTCTCAAGAGAGCTTGCATAACCGGATTC
AATGGCAATGGAGGGCAAGTTGCACTAGTAAAATTTATCCTCAAGAATGCAGTAAAATTGGAGGAAATGGTTATAGATCC
AAAAGGTAGAATAACGAACCAAATGATGGGAGAGCACAAAGGCCGTAGAATGATTAAGGAAAAACTTGTTCCAAAATACA
AGAATGGCCTACTTGTAATTCTATAACTTCTCAAGTTATGCATTCTGTTTTTCTCAATGAATTTAAGTTATGTCTGGGCA
GTGATATATTTACTTGCCCTTTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27775.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis