Browse Element(s) Details


OsAffx.30350.1.S1_at

Description tigr:9638.m00775
TID=OsAffx.30350.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0904011/11hypothetical protein
LOC_Os07g260302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g198502/11retrotransposon protein, putative, unclassified
LOC_Os09g148502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g107001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g110501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g293201/11retrotransposon protein, putative, unclassified
LOC_Os05g239701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g148901/11retrotransposon protein, putative, unclassified
LOC_Os09g120701/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09000OsAffx.25805.1.S1_x_at8/1110+4634100..4634439hypothetical protein
LOC_Os10g09000OsAffx.25805.1.S1_at7/1110+4634100..4634439hypothetical protein
LOC_Os10g09020OsAffx.20705.2.S1_x_at10/1110+4647175..4650925hypothetical protein
LOC_Os10g09030NANA10+4652826..4654828transposon protein, putative, unclassified
LOC_Os10g09040OsAffx.30350.1.S1_at11/1110+4656932..4657132hypothetical protein
LOC_Os10g09050OsAffx.20877.1.S1_at1/1110+4664225..4666248hypothetical protein
LOC_Os10g09060NANA10+4668502..4672011retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09070NANA10+4672698..4674013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09080NANA10+4677439..4678207hypothetical protein
LOC_Os10g09090Os.46504.1.S1_at11/1110+4680394..4683463Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30350.1.S1_at--768--6973Chr12:8516269..8516288 (20 bp)
GTACCTCAAGAATGGTTGGCTCCTA
LOC_Os12g14890
OsAffx.30350.1.S1_at--493--1751Chr10:4657044..4657068 (25 bp)
ACCTCAAGAATGGTTGGCTCCTAGA
LOC_Os10g09040
OsAffx.30350.1.S1_at--573--1471Chr10:4657038..4657062 (25 bp)
AGAATGGTTGGCTCCTAGAGGATGA
LOC_Os10g09040
OsAffx.30350.1.S1_at--580--8571Chr10:4657034..4657058 (25 bp)
TGGTTGGCTCCTAGAGGATGAAGTA
LOC_Os10g09040
OsAffx.30350.1.S1_at--191--7992Chr09:6814462..6814486 (25 bp)
GGATGAAGTAGAAGCGAAGCGCCTA
LOC_Os09g12070
OsAffx.30350.1.S1_at--748--2675Chr09:8861438..8861467 (25 bp)
AAGCGCCTACAGCTCAGAGCCACAA
LOC_Os09g14850
OsAffx.30350.1.S1_at--811--2154Chr09:8861451..8861474 (24 bp)
ACAGCTCAGAGCCACAAGATACAAA
LOC_Os09g14850
OsAffx.30350.1.S1_at--337--4371Chr10:4656984..4657008 (25 bp)
CCACAAGATACAAACTCAGGGCAGT
LOC_Os10g09040
OsAffx.30350.1.S1_at--896--2531Chr10:4656972..4656996 (25 bp)
AACTCAGGGCAGTTGTATCGCTCTG
LOC_Os10g09040
OsAffx.30350.1.S1_at--386--3751Chr10:4656970..4656994 (25 bp)
CTCAGGGCAGTTGTATCGCTCTGGG
LOC_Os10g09040
OsAffx.30350.1.S1_at--93--1253Chr05:13725542..13725561 (20 bp)
AGTTGTATCGCTCTGGGGTGCTCCA
LOC_Os05g23970
Target Sequence 
GTACCTCAAGAATGGTTGGCTCCTAGAGGATGAAGTAGAAGCGAAGCGCCTACAGCTCAGAGCCACAAGATACAAACTCA
GGGCAGTTGTATCGCTCTGGGGTGCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis