Browse Element(s) Details


OsAffx.6362.1.S1_at

Description tigr:9637.m01894
TID=OsAffx.6362.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2188011/11hypothetical protein
LOC_Os09g218103/11hypothetical protein
LOC_Os02g263491/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21820Os.45957.4.S1_x_at5/119+13223484..13227710retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g21830NANA9+13228306..13228713expressed protein
LOC_Os09g21840NANA9+13229087..13233448retrotransposon protein, putative, unclassified
LOC_Os09g21850NANA9+13234205..13238004retrotransposon protein, putative, unclassified
LOC_Os09g21860NANA9+13239701..13244215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g21870Os.46314.2.S1_x_at1/119+13244471..13246756retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g21880OsAffx.6362.1.S1_at11/119+13250011..13250355hypothetical protein
LOC_Os09g21890NANA9+13251813..13254142retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g21900Os.57317.1.S1_at11/119+13258205..13259188expressed protein
LOC_Os09g21910NANA9+13259670..13260416retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6362.1.S1_at--747--1131Chr09:13250301..13250325 (25 bp)
AGTGCTGGCTTCTCTGTGACAGCAG
LOC_Os09g21880
OsAffx.6362.1.S1_at--55--3892Chr09:13250171..13250312 (25 bp)
CTGTGACAGCAGAAGGTTTTTTTTT
LOC_Os09g21880
OsAffx.6362.1.S1_at--1010--10351Chr09:13250153..13250177 (25 bp)
TTTTTTTGGAAAGTTCACTGAGGAG
LOC_Os09g21880
OsAffx.6362.1.S1_at--436--9691Chr09:13250139..13250163 (25 bp)
TCACTGAGGAGACCAACATCGAGGG
LOC_Os09g21880
OsAffx.6362.1.S1_at--749--3851Chr09:13250136..13250160 (25 bp)
CTGAGGAGACCAACATCGAGGGAAG
LOC_Os09g21880
OsAffx.6362.1.S1_at--1032--6954Chr09:13250102..13250126 (25 bp)
GTAGCAAAATCTTTACTCTCATTGA
LOC_Os09g21880
OsAffx.6362.1.S1_at--101--5154Chr09:13250099..13250123 (25 bp)
GCAAAATCTTTACTCTCATTGAGAG
LOC_Os09g21880
OsAffx.6362.1.S1_at--237--9534Chr09:13250086..13250110 (25 bp)
TCTCATTGAGAGGATGGCGCTAGGA
LOC_Os09g21880
OsAffx.6362.1.S1_at--630--7613Chr02:15464292..15464311 (20 bp)
GGGCAATTTTCTGTCTATTTTCTTA
NONE
OsAffx.6362.1.S1_at--993--5193Chr03:9784293..9784313 (21 bp)
GCAATTTTCTGTCTATTTTCTTACA
NONE
OsAffx.6362.1.S1_at--478--7151Chr09:13250043..13250067 (25 bp)
GTCTATTTTCTTACAAAAGCCATAC
LOC_Os09g21880
Target Sequence 
AGTGCTGGCTTCTCTGTGACAGCAGAAGGTTTTTTTTTGGAAAGTTCACTGAGGAGACCAACATCGAGGGAAGAAGATGT
TAGTAGCAAAATCTTTACTCTCATTGAGAGGATGGCGCTAGGAGAGTTGGGGCAATTTTCTGTCTATTTTCTTACAAAAG
CCATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6362.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis