Browse Element(s) Details


Os.57317.1.S1_at

Description gb:AK111290.1
DB_XREF= gi:32996499
TID=Os.57317.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57317 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-A01, full insert sequence.
FL= gb:AK111290.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2190011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21840NANA9+13229087..13233448retrotransposon protein, putative, unclassified
LOC_Os09g21850NANA9+13234205..13238004retrotransposon protein, putative, unclassified
LOC_Os09g21860NANA9+13239701..13244215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g21870Os.46314.2.S1_x_at1/119+13244471..13246756retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g21880OsAffx.6362.1.S1_at11/119+13250011..13250355hypothetical protein
LOC_Os09g21890NANA9+13251813..13254142retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g21900Os.57317.1.S1_at11/119+13258205..13259188expressed protein
LOC_Os09g21910NANA9+13259670..13260416retrotransposon protein, putative, unclassified
LOC_Os09g21920OsAffx.29969.1.S1_at8/119+13275814..13276677hypothetical protein
LOC_Os09g21930NANA9+13278528..13278941hypothetical protein
LOC_Os09g21940Os.46715.1.S1_x_at1/119+13281343..13283825retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57317.1.S1_at--1011--1051Chr09:13258651..13258675 (25 bp)
AGGTGGCCGCAGTAGCCATCAGCAA
LOC_Os09g21900
Os.57317.1.S1_at--1044--9651Chr09:13258633..13258657 (25 bp)
TCAGCAACGAGGATATGCGCACGAT
LOC_Os09g21900
Os.57317.1.S1_at--1028--9291Chr09:13258516..13258540 (25 bp)
TCCGCTCGGAGTGGCCAATCAAGAA
LOC_Os09g21900
Os.57317.1.S1_at--887--7451Chr09:13258331..13258355 (25 bp)
GTGTCCCAGAGCTCAAAGGTCTCAC
LOC_Os09g21900
Os.57317.1.S1_at--439--2311Chr09:13258317..13258341 (25 bp)
AAAGGTCTCACCTTAACTGCGTCTC
LOC_Os09g21900
Os.57317.1.S1_at--667--2551Chr09:13258303..13258327 (25 bp)
AACTGCGTCTCATAGCATTTTCTCA
LOC_Os09g21900
Os.57317.1.S1_at--982--1531Chr09:13258290..13258314 (25 bp)
AGCATTTTCTCACATCGATTTCTCT
LOC_Os09g21900
Os.57317.1.S1_at--963--2091Chr09:13258279..13258303 (25 bp)
ACATCGATTTCTCTCTTTCTTACTG
LOC_Os09g21900
Os.57317.1.S1_at--903--9911Chr09:13258259..13258283 (25 bp)
TACTGCCACTTACTCTATCTGTTAG
LOC_Os09g21900
Os.57317.1.S1_at--876--5112Chr09:13251706..13251823 (25 bp)
GAACGGTGAAAACAGTGAATCCCTT
NONE
Os.57317.1.S1_at--55--5253Chr12:3121714..3121738 (25 bp)
GAATCCCTTCAAGTTTTATTGATCT
NONE
Target Sequence 
AGGTGGCCGCAGTAGCCATCAGCAACGAGGATATGCGCACGATGAGGGAGCGGGAGGGGATCCCGGAGCTGGAGGAAGCG
GAGACGAGGGGGCAAAGACGTCGGCGAACGCCGAGACCCCCAAAGCAGCAGAAACTCCGCTCGGAGTGGCCAATCAAGAA
GAGGCCAAAGACGTGTGCGGGCTAGGTGGCGGCAGGCTGTAGGTGGCCGTGACGCAGCCTGGGCACGAGCTGCTCGCGGT
GCTCAAGGAGATCGAGGAGCTCTTCGCGCGCGCCGCCGAGGCCGGCAAGGAGGTCACCGGCATGCTCGAGGCCGCCTCCC
GTGTCCCAGAGCTCAAAGGTCTCACCTTAACTGCGTCTCATAGCATTTTCTCACATCGATTTCTCTCTTTCTTACTGCCA
CTTACTCTATCTGTTAGAAAACGATAGATGAACGGTGAAAACAGTGAATCCCTTCAAGTTTTATTGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57317.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis