Browse Element(s) Details


OsAffx.29969.1.S1_at

Description tigr:9637.m01898
TID=OsAffx.29969.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g219208/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21890NANA9+13251813..13254142retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g21900Os.57317.1.S1_at11/119+13258205..13259188expressed protein
LOC_Os09g21910NANA9+13259670..13260416retrotransposon protein, putative, unclassified
LOC_Os09g21920OsAffx.29969.1.S1_at8/119+13275814..13276677hypothetical protein
LOC_Os09g21930NANA9+13278528..13278941hypothetical protein
LOC_Os09g21940Os.46715.1.S1_x_at1/119+13281343..13283825retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g21950OsAffx.22947.2.S1_x_at2/119+13286541..13286993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g21950OsAffx.22947.3.S1_x_at1/119+13286541..13286993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g21950OsAffx.22947.1.S1_x_at1/119+13286541..13286993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g21960Os.45976.1.S1_x_at1/119+13295617..13296871transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g21970NANA9+13297091..13298503transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29969.1.S1_at--893--4011Chr09:13275850..13275874 (25 bp)
CGTTCTCCTTCCTCGATACGTCATT
LOC_Os09g21920
OsAffx.29969.1.S1_at--726--10671Chr09:13275858..13275882 (25 bp)
TTCCTCGATACGTCATTCTTCGGGA
LOC_Os09g21920
OsAffx.29969.1.S1_at--677--3751Chr09:13275861..13275885 (25 bp)
CTCGATACGTCATTCTTCGGGATTT
LOC_Os09g21920
OsAffx.29969.1.S1_at--27--6471Chr09:13275864..13275888 (25 bp)
GATACGTCATTCTTCGGGATTTTTG
LOC_Os09g21920
OsAffx.29969.1.S1_at--937--311Chr09:13275865..13275889 (25 bp)
ATACGTCATTCTTCGGGATTTTTGA
LOC_Os09g21920
OsAffx.29969.1.S1_at--815--5591Chr09:13275893..13275917 (25 bp)
GAAATAGAGAGGACTTCGCGAAGCT
LOC_Os09g21920
OsAffx.29969.1.S1_at--343--10031Chr09:13275897..13275918 (22 bp)
TAGAGAGGACTTCGCGAAGCTGATA
LOC_Os09g21920
OsAffx.29969.1.S1_at--351--8131NONE
GGACTTCGCGAAGCTGATAGATTAC
NONE
OsAffx.29969.1.S1_at--775--2051NONE
ACTTCGCGAAGCTGATAGATTACTC
NONE
OsAffx.29969.1.S1_at--1084--4131NONE
CGCGAAGCTGATAGATTACTCACAA
NONE
OsAffx.29969.1.S1_at--484--5411Chr09:13276194..13276644 (25 bp)
GAAGCTGATAGATTACTCACAAAAA
LOC_Os09g21920
Target Sequence 
CGTTCTCCTTCCTCGATACGTCATTCTTCGGGATTTTTGAGGGGAAATAGAGAGGACTTCGCGAAGCTGATAGATTACTC
ACAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29969.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis