Browse Element(s) Details


OsAffx.3301.1.S1_at

Description tigr:9631.m02326
TID=OsAffx.3301.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2325011/11hypothetical protein
LOC_Os02g262301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g23220NANA3+13414479..13421203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g23230Os.24831.3.S1_x_at7/113+13425784..13428505retrotransposon protein, putative, unclassified
LOC_Os03g23230Os.24831.1.S1_x_at6/113+13425784..13428505retrotransposon protein, putative, unclassified
LOC_Os03g23230Os.24831.4.S1_x_at4/113+13425784..13428505retrotransposon protein, putative, unclassified
LOC_Os03g23230Os.55127.1.S1_at1/113+13425784..13428505retrotransposon protein, putative, unclassified
LOC_Os03g23230Os.24831.3.S1_s_at1/113+13425784..13428505retrotransposon protein, putative, unclassified
LOC_Os03g23250OsAffx.3301.1.S1_at11/113+13430307..13436970hypothetical protein
LOC_Os03g23250Os.33878.1.S1_at2/113+13430307..13436970hypothetical protein
LOC_Os03g23250Os.27102.1.S1_x_at1/113+13430307..13436970hypothetical protein
LOC_Os03g23760Os.23638.1.A1_x_at1/113+13439226..13448102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g23760OsAffx.20877.1.S1_at1/113+13439226..13448102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g23770OsAffx.31869.3.S1_s_at11/113+13452793..13453890retrotransposon protein, putative, unclassified
LOC_Os03g23770OsAffx.31869.3.S1_x_at5/113+13452793..13453890retrotransposon protein, putative, unclassified
LOC_Os03g23770OsAffx.31869.5.S1_x_at4/113+13452793..13453890retrotransposon protein, putative, unclassified
LOC_Os03g23770OsAffx.31869.3.S1_at2/113+13452793..13453890retrotransposon protein, putative, unclassified
LOC_Os03g23770OsAffx.31869.4.S1_x_at1/113+13452793..13453890retrotransposon protein, putative, unclassified
LOC_Os03g23770OsAffx.31869.2.S1_at1/113+13452793..13453890retrotransposon protein, putative, unclassified
LOC_Os03g23780OsAffx.731.1.S1_x_at1/113+13456379..13462003retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3301.1.S1_at--386--2992Chr03:13436158..13436179 (22 bp)
AATGTTCTGCCGCTGACGGATGTCA
LOC_Os03g23250
OsAffx.3301.1.S1_at--249--4571Chr03:13436313..13436337 (25 bp)
GCGCTCCTACGGGATCTCGGCAGAA
LOC_Os03g23250
OsAffx.3301.1.S1_at--1097--451Chr03:13436326..13436350 (25 bp)
ATCTCGGCAGAAGTCAAGCGGGTCT
LOC_Os03g23250
OsAffx.3301.1.S1_at--1058--6171Chr03:13436566..13436589 (24 bp)
GAGGAAAGCCTCAGCGAACTCCGCG
LOC_Os03g23250
OsAffx.3301.1.S1_at--40--5151Chr03:13436608..13436632 (25 bp)
GCAACTAGCGGGACCCCTGTTGTCA
LOC_Os03g23250
OsAffx.3301.1.S1_at--96--7111Chr03:13436629..13436653 (25 bp)
GTCACCTTTCCTCGCGTGGATGTTG
LOC_Os03g23250
OsAffx.3301.1.S1_at--692--7531Chr03:13436695..13436719 (25 bp)
GTGGCTGTGGTACCGCCATCCGAAC
LOC_Os03g23250
OsAffx.3301.1.S1_at--259--5431Chr03:13436716..13436740 (25 bp)
GAACCACTGGACTGGTCTGACATGA
LOC_Os03g23250
OsAffx.3301.1.S1_at--430--2111Chr03:13436735..13436759 (25 bp)
ACATGATGGCCAAGTGTCGCCGCCT
LOC_Os03g23250
OsAffx.3301.1.S1_at--954--7551Chr03:13436786..13436810 (25 bp)
GGGCTCAAATGGACTGCTTAACGGC
LOC_Os03g23250
OsAffx.3301.1.S1_at--531--3411Chr03:13436904..13436928 (25 bp)
CAGCAACGATGTCGCGTTCCAAAAC
LOC_Os03g23250
Target Sequence 
AATGTTCTGCCGCTGACGGATGTCATCGGCCCCCTTATCGACCACCAGGCCTCCGCCTCCCTCAAGGAGAAGGGGGGAGT
GGGACCAAGAGAAAGCCCTGGGCTCGGGCGAGCGCTCCTACGGGATCTCGGCAGAAGTCAAGCGGGTCTGAGGAAAGCCT
CAGCGAACTCCGCGAAAAGCAGCGACGAGGTGGCAACTAGCGGGACCCCTGTTGTCACCTTTCCTCGCGTGGATGTTGCG
CCTGCTGCCGCTGAGTCCGCCGAGGCTGTTGTCGTGCCCGTGGCTGTGGTACCGCCATCCGAACCACTGGACTGGTCTGA
CATGATGGCCAAGTGTCGCCGCCTCTTTGAGAAAACTTCTCGGGAGGTGGGGGCTCAAATGGACTGCTTAACGGCCCACG
CCACGGCGTCGGATGGAAAGGTGGCGCAGCTGGAGACGGAGCTCGAAGTCGCCCGCGACGACCTTCAAAAGATGAAGGAG
ATCGTGGCCAGCAACGATGTCGCGTTCCAAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis