Browse Element(s) Details


OsAffx.731.1.S1_x_at

Description gb:NM_193274.1
DB_XREF= gi:34913631
GEN=B1166B08.15
TID=OsAffx.731.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1166B08.15 (B1166B08.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g237801/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g23250OsAffx.3301.1.S1_at11/113+13430307..13436970hypothetical protein
LOC_Os03g23250Os.33878.1.S1_at2/113+13430307..13436970hypothetical protein
LOC_Os03g23250Os.27102.1.S1_x_at1/113+13430307..13436970hypothetical protein
LOC_Os03g23760Os.23638.1.A1_x_at1/113+13439226..13448102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g23760OsAffx.20877.1.S1_at1/113+13439226..13448102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g23770OsAffx.31869.3.S1_s_at11/113+13452793..13453890retrotransposon protein, putative, unclassified
LOC_Os03g23770OsAffx.31869.3.S1_x_at5/113+13452793..13453890retrotransposon protein, putative, unclassified
LOC_Os03g23770OsAffx.31869.5.S1_x_at4/113+13452793..13453890retrotransposon protein, putative, unclassified
LOC_Os03g23770OsAffx.31869.3.S1_at2/113+13452793..13453890retrotransposon protein, putative, unclassified
LOC_Os03g23770OsAffx.31869.4.S1_x_at1/113+13452793..13453890retrotransposon protein, putative, unclassified
LOC_Os03g23770OsAffx.31869.2.S1_at1/113+13452793..13453890retrotransposon protein, putative, unclassified
LOC_Os03g23780OsAffx.731.1.S1_x_at1/113+13456379..13462003retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g23790Os.23638.1.A1_x_at1/113+13463982..13465868retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g23800NANA3+13470589..13477323retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g23810Os.38764.1.S1_x_at8/113+13479399..13482249retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g23810Os.54151.1.S1_x_at4/113+13479399..13482249retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g23810Os.45173.1.S1_x_at3/113+13479399..13482249retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.731.1.S1_x_at--686--1551Chr01:20046090..20046151 (25 bp)
AGCTAGGAGGCCGACGACGCGAACC
NONE
OsAffx.731.1.S1_x_at--777--10071Chr01:20046087..20046108 (22 bp)
TAGGAGGCCGACGACGCGAACCCAA
NONE
OsAffx.731.1.S1_x_at--898--3251Chr01:20046065..20046089 (25 bp)
CAACGGTGCTCACCTTTGCGCCAAT
NONE
OsAffx.731.1.S1_x_at--808--7771Chr01:20046061..20046085 (25 bp)
GGTGCTCACCTTTGCGCCAATCGAC
NONE
OsAffx.731.1.S1_x_at--914--3671Chr01:20046052..20046076 (25 bp)
CTTTGCGCCAATCGACGACCGACGA
NONE
OsAffx.731.1.S1_x_at--501--7573Chr04:8074309..8074333 (25 bp)
GGGCTACGGCGCACGGCGACGACGG
NONE
OsAffx.731.1.S1_x_at--562--1053Chr03:13456494..13456515 (22 bp)
AGGTGGCGGCCGAGCTTCCCCAGCA
LOC_Os03g23780
OsAffx.731.1.S1_x_at--448--1491Chr01:20045928..20045952 (25 bp)
AGCACCGTGCGCACCTAAAGGCGAC
NONE
OsAffx.731.1.S1_x_at--694--9151Chr01:20045921..20045945 (25 bp)
TGCGCACCTAAAGGCGACGACGTCA
NONE
OsAffx.731.1.S1_x_at--368--3931Chr01:20045873..20045897 (25 bp)
CGGCGCGGCGCGACCGGAGCATGGC
NONE
OsAffx.731.1.S1_x_at--284--8371Chr01:20045826..20045850 (25 bp)
GGCGTGGCGGCGGTGCTACGGAGCA
NONE
Target Sequence 
AGCTAGGAGGCCGACGACGCGAACCCAACGGTGCTCACCTTTGCGCCAATCGACGACCGACGACGGCCGGCGACGAGAGG
CTCGGCGCCGGCGGCTCGGACCTCGTCGGCGGCGGGGCTACGGCGCACGGCGACGACGGGGAGGTGGCGGCCGAGCTTCC
CCAGCACCGTGCGCACCTAAAGGCGACGACGTCAAGCGGCGGCGACGGCGGATGCGGCGGCGCGGCGCGACCGGAGCATG
GCCGGCGGCGGCGGCGGCTTGAGGGGCGTGGCGGCGGTGCTACGGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.731.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis