Description |
gb:AK102198.1 DB_XREF=
gi:32987407
TID=Os.54151.1 CNT=1 FEA=FLmRNA TIER=FL STK=1
UG=Os.54151 (NCBI UniGene Cluster) UG_TITLE=(japonica cultivar-group) cDNA
clone:J033087D11, full insert sequence DEF=Oryza sativa (japonica cultivar-group) cDNA
clone:J033087D11, full insert sequence. FL=
gb:AK102198.1 REP_ORG=O. sativa |
Associated TIGR Gene Locus | TIGR Locus | Matching Probes | Description |
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LOC_Os05g15820 | 4/11 | retrotransposon protein, putative, unclassified, expressed | LOC_Os03g23810 | 4/11 | retrotransposon protein, putative, Ty3-gypsy subclass | LOC_Os09g11500 | 4/11 | retrotransposon protein, putative, unclassified | LOC_Os07g09814 | 4/11 | F-box domain containing protein, expressed | LOC_Os11g27950 | 4/11 | retrotransposon protein, putative, unclassified | LOC_Os08g22230 | 4/11 | transposon protein, putative, Pong sub-class | LOC_Os05g03720 | 4/11 | retrotransposon protein, putative, unclassified | LOC_Os04g07410 | 4/11 | retrotransposon protein, putative, unclassified | LOC_Os04g18170 | 4/11 | retrotransposon protein, putative, unclassified | LOC_Os05g42432 | 3/11 | retrotransposon protein, putative, unclassified | LOC_Os12g12030 | 2/11 | retrotransposon protein, putative, Ty1-copia subclass | LOC_Os03g39470 | 2/11 | retrotransposon protein, putative, Ty3-gypsy subclass | LOC_Os11g38490 | 2/11 | hypothetical protein | LOC_Os11g20120 | 2/11 | retrotransposon protein, putative, unclassified | LOC_Os10g12010 | 2/11 | retrotransposon protein, putative, unclassified | LOC_Os09g04660 | 2/11 | retrotransposon protein, putative, Ty3-gypsy subclass | LOC_Os07g23030 | 1/11 | expressed protein | LOC_Os04g18980 | 1/11 | retrotransposon protein, putative, Ty3-gypsy subclass | LOC_Os11g17830 | 1/11 | transposon protein, putative, Mutator sub-class | LOC_Os03g33980 | 1/11 | retrotransposon protein, putative, unclassified |
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Gene Context (flanking 25kb) |
|
Gene Ontology Classification | GO id | Type | Name |
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NONE | NONE | NONE |
|
Probe Info |
|
Target Sequence | ACCGCCGTTGTTGTCGTCACTTCAGCCGCGCCGCGCCGCTGCTGTGGTCGTCGCCGCCACCTTCTGTCGCCACCGTCGGG
TTCGTGAGAAGGAGGAGCACCCCGTCCGCCCCTTTGCAGCCGCCGAAGACCGCCGGAGCGCCGTCGCCGACGTAGACCCG
AGCCGAGCCGCCGTCGGACCTCGTCGCCGGCCGTCGTTTGTCGTCGTTCGTCGTAGTTCTTTGCACCGTTTCCGACGTTC
CGGAAGAGAGCGTTTACGTTGAGGAAGGTTCAGAAGTGTTTGAGGAAGCTCAAGTTGAAGAAAAAGGATCCAGAAGGAGA
AGACGTTTGGCTTATACCCCAGTTGAGCTGCCTGTGGGAGTGGAGCTGAAGCCATCGCTAGACCGTTAATTCCGCTGCTG
TTTTCTTTTCTTTTGTAAGTATGTAGCGTTATTATTATGATGGATTTGTATATTAAATTGTCAGTTTGTGTACCTCGGCT
GATTTCTCGACGAGGGTTTTATGTACAAA BLASTn GenBank NR |
Expression Profiles | Gene Chronologer Gene Chronologer (Grouped) Heterosis View Gene Correlator (coexpression analysis) SALK RiceGE Rice MPSS RiceArray Coexpression Database |
Miscellaneous | SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project: Putative homologies in ricePutative homologies in arabidopsis |