Browse Element(s) Details


OsAffx.26914.1.S1_at

Description tigr:9633.m01407
TID=OsAffx.26914.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolases family 18
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1585011/11Xylanase inhibitor protein 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15810NANA5+8901266..8905597retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g15820Os.38764.1.S1_x_at11/115+8914171..8917029retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15820OsAffx.31813.1.S1_x_at6/115+8914171..8917029retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15820Os.54151.1.S1_x_at4/115+8914171..8917029retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15820Os.46610.1.S1_x_at4/115+8914171..8917029retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15830OsAffx.3496.1.S1_x_at2/115+8915827..8917045retrotransposon protein, putative, unclassified
LOC_Os05g15830OsAffx.28492.1.S1_at1/115+8915827..8917045retrotransposon protein, putative, unclassified
LOC_Os05g15840OsAffx.18229.1.S1_x_at1/115+8917883..8922376retrotransposon protein, putative, unclassified
LOC_Os05g15850OsAffx.26914.1.S1_at11/115+8927584..8928656Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15860NANA5+8931006..8933564retrotransposon protein, putative, unclassified
LOC_Os05g15870OsAffx.26915.1.S1_at10/115+8934595..8937329hypothetical protein
LOC_Os05g15880Os.53670.1.S1_at11/115+8938717..8939867Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15890Os.10835.1.S1_at11/115+8945423..8952609helicase, putative, expressed
LOC_Os05g15900OsAffx.4351.1.S1_at11/115+8953030..8953676hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26914.1.S1_at--585--4231Chr05:8927961..8927985 (25 bp)
CCGACCTGGACGACTACCTCTGGAA
LOC_Os05g15850
OsAffx.26914.1.S1_at--100--9091Chr05:8928105..8928129 (25 bp)
TGCTCCACGGCCACAGCAATGGCGG
LOC_Os05g15850
OsAffx.26914.1.S1_at--865--4811Chr05:8928199..8928223 (25 bp)
GCTCTTCAGCCGCATCCACGTGAAG
LOC_Os05g15850
OsAffx.26914.1.S1_at--706--1671Chr05:8928206..8928230 (25 bp)
AGCCGCATCCACGTGAAGCTGTTCA
LOC_Os05g15850
OsAffx.26914.1.S1_at--286--8431Chr05:8928251..8928275 (25 bp)
GGCCGGAGAGAGTCGCTGGAGAAGT
LOC_Os05g15850
OsAffx.26914.1.S1_at--732--8131Chr05:8928292..8928316 (25 bp)
GGACAGCCGGATCTACGTCAGCATT
LOC_Os05g15850
OsAffx.26914.1.S1_at--458--2151Chr05:8928294..8928318 (25 bp)
ACAGCCGGATCTACGTCAGCATTGT
LOC_Os05g15850
OsAffx.26914.1.S1_at--671--1671Chr05:8928296..8928320 (25 bp)
AGCCGGATCTACGTCAGCATTGTGG
LOC_Os05g15850
OsAffx.26914.1.S1_at--741--4251Chr05:8928298..8928322 (25 bp)
CCGGATCTACGTCAGCATTGTGGCT
LOC_Os05g15850
OsAffx.26914.1.S1_at--697--1591Chr05:8928396..8928420 (25 bp)
AGCTCCCCAACTACGGAGGCATCAT
LOC_Os05g15850
OsAffx.26914.1.S1_at--109--9311Chr05:8928399..8928423 (25 bp)
TCCCCAACTACGGAGGCATCATGGT
LOC_Os05g15850
Target Sequence 
CCGACCTGGACGACTACCTCTGGAACGCCTTCCTCGGCGGCGGCCGCAGCGGCGTCGCCCGCCCATTCGGCGACGCCGTC
GTCAACGGCATCGACTTCTTCATCGACCAGGGCGCGACGGAGCACTACGACGAGCTGGCCAGGCTGCTCCACGGCCACAG
CAATGGCGGCGTGATGCTGACGGCGACGGCGCGGTGCGTGTTCCCGGACCAGCGGCAGCAGGCGGCGCTGGCGACGGGGC
TCTTCAGCCGCATCCACGTGAAGCTGTTCAACGACGGGCGGTGCACCTGGGGCCGGAGAGAGTCGCTGGAGAAGTGGGCG
GCGGCGTACCCGGACAGCCGGATCTACGTCAGCATTGTGGCTTCGCCGGAGGCGGACAGGGACGCCTACATGTCGCACAA
GGATCTCTACTTCGATGTGCTGCAGTTCATCAACAAGCTCCCCAACTACGGAGGCATCATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26914.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis