Browse Element(s) Details


Os.53670.1.S1_at

Description gb:AK073843.1
DB_XREF= gi:32983866
TID=Os.53670.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53670 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068H05, full insert sequence.
FL= gb:AK073843.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1588011/11Xylanase inhibitor protein 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15820Os.38764.1.S1_x_at11/115+8914171..8917029retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15820OsAffx.31813.1.S1_x_at6/115+8914171..8917029retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15820Os.54151.1.S1_x_at4/115+8914171..8917029retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15820Os.46610.1.S1_x_at4/115+8914171..8917029retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15830OsAffx.3496.1.S1_x_at2/115+8915827..8917045retrotransposon protein, putative, unclassified
LOC_Os05g15830OsAffx.28492.1.S1_at1/115+8915827..8917045retrotransposon protein, putative, unclassified
LOC_Os05g15840OsAffx.18229.1.S1_x_at1/115+8917883..8922376retrotransposon protein, putative, unclassified
LOC_Os05g15850OsAffx.26914.1.S1_at11/115+8927584..8928656Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15860NANA5+8931006..8933564retrotransposon protein, putative, unclassified
LOC_Os05g15870OsAffx.26915.1.S1_at10/115+8934595..8937329hypothetical protein
LOC_Os05g15880Os.53670.1.S1_at11/115+8938717..8939867Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15890Os.10835.1.S1_at11/115+8945423..8952609helicase, putative, expressed
LOC_Os05g15900OsAffx.4351.1.S1_at11/115+8953030..8953676hypothetical protein
LOC_Os05g15910OsAffx.14715.1.S1_at10/115+8954254..8956660hypothetical protein
LOC_Os05g15920NANA5+8961095..8962226Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15930OsAffx.14716.1.S1_at11/115+8963427..8969481transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53670.1.S1_at--1130--2791Chr05:8939399..8939423 (25 bp)
AAGATGTTCAGCGACGGCCGGTGCC
LOC_Os05g15880
Os.53670.1.S1_at--256--3511Chr05:8939427..8939451 (25 bp)
CATGGTCCAGGAGGCAGTCGTTCGA
LOC_Os05g15880
Os.53670.1.S1_at--1068--5951Chr05:8939450..8939474 (25 bp)
GAGAAGTGGGCAAAGACGTACCCGC
LOC_Os05g15880
Os.53670.1.S1_at--734--2911Chr05:8939519..8939543 (25 bp)
AAGGACGCCTACATGCCGCCGGAGG
LOC_Os05g15880
Os.53670.1.S1_at--171--1391Chr05:8939625..8939649 (25 bp)
AGACCGGCTTCACGGCTCACCTGTG
LOC_Os05g15880
Os.53670.1.S1_at--878--1931Chr05:8939636..8939660 (25 bp)
ACGGCTCACCTGTGAGTGTGTGACT
LOC_Os05g15880
Os.53670.1.S1_at--805--7471Chr05:8939651..8939675 (25 bp)
GTGTGTGACTGGTCGTGACATTTGA
LOC_Os05g15880
Os.53670.1.S1_at--158--5371Chr05:8939674..8939698 (25 bp)
GAAGACCATTAATTCCTTAATATTG
LOC_Os05g15880
Os.53670.1.S1_at--201--1571Chr05:8939709..8939733 (25 bp)
AGCTTTGTGTGCAGTACTTGTGTAC
LOC_Os05g15880
Os.53670.1.S1_at--527--8671Chr05:8939716..8939740 (25 bp)
TGTGCAGTACTTGTGTACTACACAA
LOC_Os05g15880
Os.53670.1.S1_at--1079--2391Chr05:8939762..8939786 (25 bp)
AAACATATATTGTGTCTGCTATAAA
LOC_Os05g15880
Target Sequence 
AAGATGTTCAGCGACGGCCGGTGCCCGGCATGGTCCAGGAGGCAGTCGTTCGAGAAGTGGGCAAAGACGTACCCGCAGAG
CCGTGTCCTGATCGGCGTCGTGGCCTCGCCGGACGTGGACAAGGACGCCTACATGCCGCCGGAGGCCCTCAACAACCTGC
TGCAGTTCATCAACAAGCAGCCCAACTTCGGAGGCGTCATGGTTTGGGACAGGTTCTACGACAAGAAGACCGGCTTCACG
GCTCACCTGTGAGTGTGTGACTGGTCGTGACATTTGAAGACCATTAATTCCTTAATATTGGATCAATAAAAGCTTTGTGT
GCAGTACTTGTGTACTACACAAATAAAGTCATGTAATGAAAATAAACATATATTGTGTCTGCTATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53670.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis