Browse Element(s) Details


OsAffx.14716.1.S1_at

Description tigr:9633.m01416
TID=OsAffx.14716.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1593011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15880Os.53670.1.S1_at11/115+8938717..8939867Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15890Os.10835.1.S1_at11/115+8945423..8952609helicase, putative, expressed
LOC_Os05g15900OsAffx.4351.1.S1_at11/115+8953030..8953676hypothetical protein
LOC_Os05g15910OsAffx.14715.1.S1_at10/115+8954254..8956660hypothetical protein
LOC_Os05g15920NANA5+8961095..8962226Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15930OsAffx.14716.1.S1_at11/115+8963427..8969481transposon protein, putative, unclassified, expressed
LOC_Os05g15940OsAffx.18662.1.S1_at1/115+8971553..8980791retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15940Os.38751.1.A1_at1/115+8971553..8980791retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15940OsAffx.27810.1.S1_x_at1/115+8971553..8980791retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15950OsAffx.12179.1.S1_x_at1/115+8984694..8988279retrotransposon protein, putative, unclassified
LOC_Os05g15950OsAffx.19369.1.S1_at1/115+8984694..8988279retrotransposon protein, putative, unclassified
LOC_Os05g15950OsAffx.12179.1.S1_at1/115+8984694..8988279retrotransposon protein, putative, unclassified
LOC_Os05g15960NANA5+8990846..8993761retrotransposon protein, putative, unclassified
LOC_Os05g15970NANA5+8994091..9000171retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14716.1.S1_at--36--6531Chr05:8968942..8968966 (25 bp)
GATATTGTTCACAACTGCTTGACAA
LOC_Os05g15930
OsAffx.14716.1.S1_at--636--10731Chr05:8968976..8969000 (25 bp)
TTGAAACATTGTGGCCTCAAATGAT
LOC_Os05g15930
OsAffx.14716.1.S1_at--981--3091Chr05:8969027..8969051 (25 bp)
AATACCTACAGACAATGTGGAGAAC
LOC_Os05g15930
OsAffx.14716.1.S1_at--787--7591Chr05:8969054..8969078 (25 bp)
GGGAAAACTATATACCATTGTACTT
LOC_Os05g15930
OsAffx.14716.1.S1_at--692--10391Chr05:8969089..8969113 (25 bp)
TTTTGCCCATTTATTCACAGTACAG
LOC_Os05g15930
OsAffx.14716.1.S1_at--624--7711Chr05:8969148..8969172 (25 bp)
GGGTGTGGGCCCAACACACAGTGTA
LOC_Os05g15930
OsAffx.14716.1.S1_at--1071--3291Chr05:8969162..8969186 (25 bp)
CACACAGTGTAATGAGTTTCCTTAA
LOC_Os05g15930
OsAffx.14716.1.S1_at--755--5131Chr05:8969231..8969255 (25 bp)
GCAAAGATCATCAGTCCAGAACAAA
LOC_Os05g15930
OsAffx.14716.1.S1_at--599--5411Chr05:8969256..8969280 (25 bp)
GAAGCCTAAGACACTATGGTCAAGC
LOC_Os05g15930
OsAffx.14716.1.S1_at--432--5631Chr05:8969265..8969289 (25 bp)
GACACTATGGTCAAGCTACAAGATT
LOC_Os05g15930
OsAffx.14716.1.S1_at--121--2711Chr05:8969297..8969321 (25 bp)
AAGCTTCAGAGATGTACAACTTGAG
LOC_Os05g15930
Target Sequence 
GATATTGTTCACAACTGCTTGACAAGAGTTGAGTTTGAAACATTGTGGCCTCAAATGATTGAAAAGTATGGTTTGCAAAA
CATCAAATACCTACAGACAATGTGGAGAACAAGGGAAAACTATATACCATTGTACTTTAAATTAGATTTTTGCCCATTTA
TTCACAGTACAGCACTAAGTGAGGTGACAAATGCAAGGTTCAAAAGGGGTGTGGGCCCAACACACAGTGTAATGAGTTTC
CTTAAAGAATTTGAGATAATCAATGACACAATCTTTGATACAGAATTTTGCAAAGATCATCAGTCCAGAACAAAGAAGCC
TAAGACACTATGGTCAAGCTACAAGATTGAACTACAAGCTTCAGAGATGTACAACTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14716.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis