Browse Element(s) Details


OsAffx.18662.1.S1_at

Description tigr:9640.m00337
TID=OsAffx.18662.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0423011/11hypothetical protein
LOC_Os11g0447011/11hypothetical protein
LOC_Os05g159401/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04200NANA12+1765096..1766963GRAS family transcription factor containing protein
LOC_Os12g04210Os.52118.1.S1_at11/1112+1775603..1776673expressed protein
LOC_Os12g04220OsAffx.18661.1.S1_at11/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04220OsAffx.18661.2.S1_x_at8/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04220OsAffx.24652.1.S1_x_at1/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04220Os.38273.1.S1_at1/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04230OsAffx.18662.1.S1_at11/1112+1789093..1790190hypothetical protein
LOC_Os12g04240Os.10842.1.S1_at11/1112+1793279..1796384EF hand family protein, expressed
LOC_Os12g04240Os.10842.1.S1_x_at11/1112+1793279..1796384EF hand family protein, expressed
LOC_Os12g04250NANA12+1798483..1799978retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04260Os.26862.1.S1_at11/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.26862.3.S1_a_at11/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.26862.1.S1_s_at8/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.10427.1.S1_a_at2/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04270Os.5332.1.S1_at10/1112+1806669..1810157Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os12g04270Os.24981.1.A1_at1/1112+1806669..1810157Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os12g04280OsAffx.19484.1.S1_at11/1112+1812870..1814809hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18662.1.S1_at--624--6172Chr12:1789641..1789665 (25 bp)
GAGGAACGCCAAGAAACCAACGTGG
LOC_Os12g04230
OsAffx.18662.1.S1_at--1120--10612Chr12:1789616..1789640 (25 bp)
TTCCCGGGCCCAAGAGGCTCCGAGA
LOC_Os12g04230
OsAffx.18662.1.S1_at--676--9292Chr12:1789598..1789622 (25 bp)
TCCGAGAGGCGGAAGCCACCGGCTA
LOC_Os12g04230
OsAffx.18662.1.S1_at--485--2672Chr12:1789502..1789526 (25 bp)
AAGCGACCGCCTCGATGGACTACTG
LOC_Os12g04230
OsAffx.18662.1.S1_at--1093--4052Chr12:1789490..1789514 (25 bp)
CGATGGACTACTGCTGCTCGACGAC
LOC_Os12g04230
OsAffx.18662.1.S1_at--100--5793Chr12:1789471..1789495 (25 bp)
GACGACGACACACACGGCGGACGAC
LOC_Os12g04230
OsAffx.18662.1.S1_at--1121--8852Chr12:1789411..1789435 (25 bp)
TGATGCCATCAAGCCAGATGCTTAC
LOC_Os12g04230
OsAffx.18662.1.S1_at--930--2652Chr12:1789401..1789425 (25 bp)
AAGCCAGATGCTTACGACGGCGGCG
LOC_Os12g04230
OsAffx.18662.1.S1_at--473--1612Chr12:1789346..1789370 (25 bp)
AGCTGGTTCTCTGCGGCAACGGCCA
LOC_Os12g04230
OsAffx.18662.1.S1_at--618--2572Chr12:1789242..1789266 (25 bp)
AACGGCTATGGTGTTGGCTTCAATG
LOC_Os12g04230
OsAffx.18662.1.S1_at--392--3252Chr12:1789162..1789186 (25 bp)
CAACGATTTGTTCGTCGACTTCGAC
LOC_Os12g04230
Target Sequence 
GAGGAACGCCAAGAAACCAACGTGGTTCCCGGGCCCAAGAGGCTCCGAGAGGCGGAAGCCACCGGCTACGACGCGCCGGC
GCCGNNNNNNCCACAGCCCGACGTCGGATNCTCGTACTCCGGCGGCGGCGAGACGTCTCAAGCGACCGCCTCGATGGACT
ACTGCTGCTCGACGACGACACACACGGCGGACGACACGGCCAATGCCGCCNNNTACTACNACGGCGACGNTGATGCCATC
AAGCCAGATGCTTACGACGGCGGCGACTACGGCATCGGCNTCAACGCAGACGGGGAGCTGGTTCTCTGCGGCAACGGCCA
CGGTGGCATCGGGACGCAGGGACAGANGCCATTGGCAATGCAGAACACCAACGGGGAGATGACCTTGTTCTCACCNATGA
ACGGCTATGGTGTTGGCTTCAATGAGGAGGTGAGACAAGAACCACAAGTAGNAGGTGAGGTGGAGATGNATNATTTCTTC
AACGATTTGTTCGTCGACTTCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18662.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis