Browse Element(s) Details


OsAffx.18661.2.S1_x_at

Description tigr:9639.m00358
TID=OsAffx.18661.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=calcium-translocating P-type ATPase, PMCA-type
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0446011/11Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g042208/11Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04409Os.4757.1.S1_at1/1111+1836657..1836818NA
LOC_Os11g04420Os.6869.1.S1_s_at11/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.6869.1.S1_at11/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.27194.1.A1_a_at9/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.27194.2.A1_x_at6/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420OsAffx.30813.1.A1_at4/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.12342.1.S2_at2/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.4757.1.S1_at2/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.12342.1.S1_at1/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04430NANA11+1846679..1846891hypothetical protein
LOC_Os11g04440Os.52082.1.S1_at10/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04440Os.52539.1.S1_at10/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04440OsAffx.18660.1.S1_at8/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04450OsAffx.30814.1.S1_at11/1111+1856166..1856636hypothetical protein
LOC_Os11g04460OsAffx.18661.2.S1_x_at11/1111+1858363..1864172Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os11g04460OsAffx.18661.1.S1_at2/1111+1858363..1864172Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os11g04470OsAffx.18662.1.S1_at11/1111+1864568..1865996hypothetical protein
LOC_Os11g04470OsAffx.10096.1.S1_x_at1/1111+1864568..1865996hypothetical protein
LOC_Os11g04480Os.10842.2.S1_at9/1111+1867964..1871274EF hand family protein, expressed
LOC_Os11g04480Os.10842.1.S1_x_at9/1111+1867964..1871274EF hand family protein, expressed
LOC_Os11g04490Os.26862.3.S1_a_at11/1111+1878361..1880910saccharopine dehydrogenase family protein, expressed
LOC_Os11g04500Os.5332.1.S1_at9/1111+1882964..1886469Cytochrome C biogenesis protein transmembrane region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005773cellular_componentvacuole
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0009706cellular_componentchloroplast inner membrane
GO:0005262molecular_functioncalcium channel activity
GO:0005388molecular_functioncalcium-transporting ATPase activity
GO:0005516molecular_functioncalmodulin binding
GO:0015085molecular_functioncalcium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18661.2.S1_x_at--473--3692Chr12:1787869..1787893 (25 bp)
CTATTTGTACTTGGAGCTCTCATGT
LOC_Os12g04220
OsAffx.18661.2.S1_x_at--782--2251Chr11:1863404..1863428 (25 bp)
AAATACACTGATCTTCAACTCCTTC
LOC_Os11g04460
OsAffx.18661.2.S1_x_at--411--3252Chr12:1787961..1787984 (24 bp)
CAACTCCTTCGTGTTTTGTCAGGTA
LOC_Os12g04220
OsAffx.18661.2.S1_x_at--295--6811Chr11:1863758..1863782 (25 bp)
GTTTTCCGTGGTATCATCAGCAATT
LOC_Os11g04460
OsAffx.18661.2.S1_x_at--347--32Chr12:1788321..1788345 (25 bp)
ATTGGATCTTCATTGCAGTCATAGC
LOC_Os12g04220
OsAffx.18661.2.S1_x_at--452--3572Chr12:1788373..1788397 (25 bp)
CATAGAGTTTCTTGGCACTTTCGCC
LOC_Os12g04220
OsAffx.18661.2.S1_x_at--494--2572Chr12:1788413..1788437 (25 bp)
AACTGGCAACATTGGCTGCTCAGCG
LOC_Os12g04220
OsAffx.18661.2.S1_x_at--784--5552Chr12:1788503..1788527 (25 bp)
GAAACCTCTGCAACTCCAAATGGAT
LOC_Os12g04220
OsAffx.18661.2.S1_x_at--463--10692Chr12:1788537..1788561 (25 bp)
TTGCCAATGGCCCTGATGACATATA
LOC_Os12g04220
OsAffx.18661.2.S1_x_at--364--9172Chr12:1788621..1788645 (25 bp)
TGCCCAGCTCAGTTCAGTTGTTTTG
LOC_Os12g04220
OsAffx.18661.2.S1_x_at--787--8211Chr11:1864104..1864128 (25 bp)
GGAATACACTAACCATCCACTGATT
LOC_Os11g04460
Target Sequence 
CTATTTGTACTTGGAGCTCTCATGTTTGGTGGAGAAAGCCTTCTGAACATCAAGGGTGCAGATTCCAAATCCATCATAAA
TACACTGATCTTCAACTCCTTCGTGTTTTGTCAGGTATTCAATGAAATAAACAGCAGAGAAATGCAGAAGATCAATGTTT
TCCGTGGTATCATCAGCAATTGGATCTTCATTGCAGTCATAGCTGCAACCGTAGCATTTCAAGTGGTGATCATAGAGTTT
CTTGGCACTTTCGCCAGTACTGTTCCGCTCAACTGGCAACATTGGCTGCTCAGCGTCGGCCTTGGCTCCATCAGCCTGAT
TGTTGGTGTCATCTTGAAGTGTATACCAGTTGGTTCAGGTGAAACCTCTGCAACTCCAAATGGATACAGGCCACTTGCCA
ATGGCCCTGATGACATATAGCTGAAGAATAATCACTAATAAGGGAAAGTAGAATCCAGGGTGCAATACGGCATCCAGCTG
CCCAGCTCAGTTCAGTTGTTTTGGAATACACTAACCATCCACTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18661.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis