Browse Element(s) Details


OsAffx.18660.1.S1_at

Description tigr:9639.m00356
TID=OsAffx.18660.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g044408/11Mitochondrial glycoprotein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04390Os.12347.1.S1_x_at11/1111+1820374..1827290RNA recognition motif family protein, expressed
LOC_Os11g04390Os.12347.4.S1_x_at10/1111+1820374..1827290RNA recognition motif family protein, expressed
LOC_Os11g04400Os.53517.2.S1_at1/1111+1828395..1831070GRAS family transcription factor containing protein
LOC_Os11g04409Os.4757.1.S1_at1/1111+1836657..1836818NA
LOC_Os11g04420Os.6869.1.S1_s_at11/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.6869.1.S1_at11/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.27194.1.A1_a_at9/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.27194.2.A1_x_at6/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420OsAffx.30813.1.A1_at4/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.12342.1.S2_at2/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.4757.1.S1_at2/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.12342.1.S1_at1/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04430NANA11+1846679..1846891hypothetical protein
LOC_Os11g04440Os.52082.1.S1_at10/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04440Os.52539.1.S1_at10/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04440OsAffx.18660.1.S1_at8/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04450OsAffx.30814.1.S1_at11/1111+1856166..1856636hypothetical protein
LOC_Os11g04460OsAffx.18661.2.S1_x_at11/1111+1858363..1864172Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os11g04460OsAffx.18661.1.S1_at2/1111+1858363..1864172Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os11g04470OsAffx.18662.1.S1_at11/1111+1864568..1865996hypothetical protein
LOC_Os11g04470OsAffx.10096.1.S1_x_at1/1111+1864568..1865996hypothetical protein
LOC_Os11g04480Os.10842.2.S1_at9/1111+1867964..1871274EF hand family protein, expressed
LOC_Os11g04480Os.10842.1.S1_x_at9/1111+1867964..1871274EF hand family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005759cellular_componentmitochondrial matrix
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18660.1.S1_at--276--7131Chr11:1851432..1851456 (25 bp)
GTCATAAGGGTATTGCTGATCTTTT
LOC_Os11g04440
OsAffx.18660.1.S1_at--402--4751NONE
GCTGATCTTTTTGGAGCTGTTGGGA
NONE
OsAffx.18660.1.S1_at--776--7171Chr11:1850695..1850719 (25 bp)
GTCGGCATTTTTTCCAGAAGCGGCA
LOC_Os11g04440
OsAffx.18660.1.S1_at--414--1451Chr11:1850680..1850704 (25 bp)
AGAAGCGGCACGTGTTCCGGCAGCA
LOC_Os11g04440
OsAffx.18660.1.S1_at--1149--3531Chr11:1850313..1850672 (25 bp)
CATCTCCACCTAGCCAGGTTGGTTT
LOC_Os11g04440
OsAffx.18660.1.S1_at--213--4351NONE
CCAGGTTGGTTTAGTGGCATTCAAA
NONE
OsAffx.18660.1.S1_at--326--211Chr11:1850234..1850255 (22 bp)
ATTTGACCACAAATGGACCCATCTG
LOC_Os11g04440
OsAffx.18660.1.S1_at--156--2311Chr11:1849903..1850245 (25 bp)
AAATGGACCCATCTGCTGAAATATC
LOC_Os11g04440
OsAffx.18660.1.S1_at--563--9491Chr11:1849892..1849915 (24 bp)
TCTGCTGAAATATCTTGCCGCTTGC
LOC_Os11g04440
OsAffx.18660.1.S1_at--857--9171Chr11:1849877..1849901 (25 bp)
TGCCGCTTGCAAAACTCCTCTTTTT
LOC_Os11g04440
OsAffx.18660.1.S1_at--280--3351NONE
CACGCTCGGAGGGAAAATTTGGATC
NONE
Target Sequence 
GTCATAAGGGTATTGCTGATCTTTTTGGAGCTGTTGGGAAAGCAGCCATCGCTCCCCCAAGCTACCCCGCGTCGGCATTT
TTTCCAGAAGCGGCACGTGTTCCGGCAGCACCAGTCCCATCTCCACCTAGCCAGGTTGGTTTAGTGGCATTCAAAGATTT
ATTCATGTCCATTAATAACATAGTTGTTATCTCCACAATATTTGACCACAAATGGACCCATCTGCTGAAATATCTTGCCG
CTTGCAAAACTCCTCTTTTTTTTGCTGCTGAAATTCATATGAAGCAGTTCAGTCTGAAGCCAATGAAAGCATTGTTCAAT
GCTTCAACTGTAAGTTATGATGTCAAGGAGATTGAACGTCCTGAAGAAAAAATGGTGAAACGGATGACGGGATGCCACGC
TCGGAGGGAAAATTTGGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis