Browse Element(s) Details


Os.52539.1.S1_at

Description gb:AK067823.1
DB_XREF= gi:32977841
TID=Os.52539.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52539 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013120E15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013120E15, full insert sequence.
FL= gb:AK067823.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0444010/11Mitochondrial glycoprotein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04390Os.12347.1.S1_x_at11/1111+1820374..1827290RNA recognition motif family protein, expressed
LOC_Os11g04390Os.12347.4.S1_x_at10/1111+1820374..1827290RNA recognition motif family protein, expressed
LOC_Os11g04400Os.53517.2.S1_at1/1111+1828395..1831070GRAS family transcription factor containing protein
LOC_Os11g04409Os.4757.1.S1_at1/1111+1836657..1836818NA
LOC_Os11g04420Os.6869.1.S1_s_at11/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.6869.1.S1_at11/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.27194.1.A1_a_at9/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.27194.2.A1_x_at6/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420OsAffx.30813.1.A1_at4/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.12342.1.S2_at2/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.4757.1.S1_at2/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.12342.1.S1_at1/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04430NANA11+1846679..1846891hypothetical protein
LOC_Os11g04440Os.52082.1.S1_at10/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04440Os.52539.1.S1_at10/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04440OsAffx.18660.1.S1_at8/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04450OsAffx.30814.1.S1_at11/1111+1856166..1856636hypothetical protein
LOC_Os11g04460OsAffx.18661.2.S1_x_at11/1111+1858363..1864172Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os11g04460OsAffx.18661.1.S1_at2/1111+1858363..1864172Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os11g04470OsAffx.18662.1.S1_at11/1111+1864568..1865996hypothetical protein
LOC_Os11g04470OsAffx.10096.1.S1_x_at1/1111+1864568..1865996hypothetical protein
LOC_Os11g04480Os.10842.2.S1_at9/1111+1867964..1871274EF hand family protein, expressed
LOC_Os11g04480Os.10842.1.S1_x_at9/1111+1867964..1871274EF hand family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005759cellular_componentmitochondrial matrix
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52539.1.S1_at--993--8391NONE
GGCCGGAGTTCAGAAATTTGGATCC
NONE
Os.52539.1.S1_at--705--231Chr11:1848724..1848748 (25 bp)
ATATTTCCAGTACCGAAGACCATTA
LOC_Os11g04440
Os.52539.1.S1_at--460--9851Chr11:1848701..1848725 (25 bp)
TAAATTGTTCCAGTCAAATGCGCAC
LOC_Os11g04440
Os.52539.1.S1_at--407--6691Chr11:1848695..1848719 (25 bp)
GTTCCAGTCAAATGCGCACACTTTT
LOC_Os11g04440
Os.52539.1.S1_at--385--3031Chr11:1848685..1848709 (25 bp)
AATGCGCACACTTTTGTTGTGACAA
LOC_Os11g04440
Os.52539.1.S1_at--980--6591Chr11:1848670..1848694 (25 bp)
GTTGTGACAAACTGGCAATGCATAG
LOC_Os11g04440
Os.52539.1.S1_at--136--3571Chr11:1848650..1848674 (25 bp)
CATAGATGCTAGCTTCGGAATGCAA
LOC_Os11g04440
Os.52539.1.S1_at--351--3951Chr11:1848635..1848659 (25 bp)
CGGAATGCAATTGCGGTGCTTAATT
LOC_Os11g04440
Os.52539.1.S1_at--402--9591Chr11:1848615..1848639 (25 bp)
TAATTTAGTTTCGTGGAATGAACCA
LOC_Os11g04440
Os.52539.1.S1_at--255--3351Chr11:1848592..1848616 (25 bp)
CACGAAATCACCATACTTTGCTCGA
LOC_Os11g04440
Os.52539.1.S1_at--934--3071Chr11:1848587..1848611 (25 bp)
AATCACCATACTTTGCTCGAATCTA
LOC_Os11g04440
Target Sequence 
GGCCGGAGTTCAGAAATTTGGATCCGCAGTTACAGGTTGCATTGAAAGGGTATATGGTGGCAAGAGGCGTTAACTCCAAA
CTGGCAAGCTTACTTCACCACCATTTGGTTGAGAAGGAGCGGTGGCAATATATGAACTGGCTGAAAACTTTGGAAGAAAT
GTTCAGCAAAGATCATTGACAAAATATTTCCAGTACCGAAGACCATTAAATTGTTCCAGTCAAATGCGCACACTTTTGTT
GTGACAAACTGGCAATGCATAGATGCTAGCTTCGGAATGCAATTGCGGTGCTTAATTTAGTTTCGTGGAATGAACCACGA
AATCACCATACTTTGCTCGAATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52539.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis