Browse Element(s) Details


Os.10842.2.S1_at

Description gb:AK103409.1
DB_XREF= gi:32988618
TID=Os.10842.2
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10842 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033128E16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033128E16, full insert sequence.
FL= gb:AK103409.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g044809/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04420Os.6869.1.S1_s_at11/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.6869.1.S1_at11/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.27194.1.A1_a_at9/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.27194.2.A1_x_at6/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420OsAffx.30813.1.A1_at4/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.12342.1.S2_at2/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.4757.1.S1_at2/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.12342.1.S1_at1/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04430NANA11+1846679..1846891hypothetical protein
LOC_Os11g04440Os.52082.1.S1_at10/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04440Os.52539.1.S1_at10/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04440OsAffx.18660.1.S1_at8/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04450OsAffx.30814.1.S1_at11/1111+1856166..1856636hypothetical protein
LOC_Os11g04460OsAffx.18661.2.S1_x_at11/1111+1858363..1864172Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os11g04460OsAffx.18661.1.S1_at2/1111+1858363..1864172Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os11g04470OsAffx.18662.1.S1_at11/1111+1864568..1865996hypothetical protein
LOC_Os11g04470OsAffx.10096.1.S1_x_at1/1111+1864568..1865996hypothetical protein
LOC_Os11g04480Os.10842.2.S1_at9/1111+1867964..1871274EF hand family protein, expressed
LOC_Os11g04480Os.10842.1.S1_x_at9/1111+1867964..1871274EF hand family protein, expressed
LOC_Os11g04490Os.26862.3.S1_a_at11/1111+1878361..1880910saccharopine dehydrogenase family protein, expressed
LOC_Os11g04500Os.5332.1.S1_at9/1111+1882964..1886469Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os11g04510OsAffx.19484.1.S1_at11/1111+1890538..1891459hypothetical protein
LOC_Os11g04520Os.26409.3.S1_s_at11/1111+1893743..1897887TAP42-like family protein, expressed
LOC_Os11g04520Os.26409.1.S1_a_at11/1111+1893743..1897887TAP42-like family protein, expressed
LOC_Os11g04520Os.26409.2.S1_s_at11/1111+1893743..1897887TAP42-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10842.2.S1_at--1031--1411Chr11:1868047..1868071 (25 bp)
AGAAATCGCATATCGATCAGCCCAC
LOC_Os11g04480
Os.10842.2.S1_at--879--2271Chr11:1868045..1868069 (25 bp)
AAATCGCATATCGATCAGCCCACAA
LOC_Os11g04480
Os.10842.2.S1_at--333--531Chr11:1868043..1868067 (25 bp)
ATCGCATATCGATCAGCCCACAAAT
LOC_Os11g04480
Os.10842.2.S1_at--547--9351Chr11:1868042..1868066 (25 bp)
TCGCATATCGATCAGCCCACAAATT
LOC_Os11g04480
Os.10842.2.S1_at--1019--4951Chr11:1868040..1868064 (25 bp)
GCATATCGATCAGCCCACAAATTCA
LOC_Os11g04480
Os.10842.2.S1_at--591--10151Chr11:1868037..1868061 (25 bp)
TATCGATCAGCCCACAAATTCAATG
LOC_Os11g04480
Os.10842.2.S1_at--188--6451Chr11:1868033..1868057 (25 bp)
GATCAGCCCACAAATTCAATGCATT
LOC_Os11g04480
Os.10842.2.S1_at--801--671Chr11:1868002..1868026 (25 bp)
ATGACTCATAGAAAGGACTAAGCCG
LOC_Os11g04480
Os.10842.2.S1_at--680--10011Chr11:1867994..1868018 (25 bp)
TAGAAAGGACTAAGCCGAGTGAAAT
LOC_Os11g04480
Os.10842.2.S1_at--948--10632Chr12:1793268..1793292 (25 bp)
TTCGAAGTGCTTTGATATCGCTTGA
NONE
Os.10842.2.S1_at--748--9352Chr12:1793267..1793291 (25 bp)
TCGAAGTGCTTTGATATCGCTTGAA
NONE
Target Sequence 
AGAAATCGCATATCGATCAGCCCACAAATTCAATGCATTTGTGAAATGACTCATAGAAAGGACTAAGCCGAGTGAAATGA
AAGTTTCGAAGTGCTTTGATATCGCTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10842.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis