Browse Element(s) Details


Os.27194.1.A1_a_at

Description gb:CB647553
DB_XREF= gi:29642546
DB_XREF=OSJNEb10I11.r
CLONE=OSJNEb10I11
TID=Os.27194.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.27194 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g044209/11Uncharacterised protein family containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04370Os.23431.1.A1_at11/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04370OsAffx.19483.1.S1_s_at10/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04370OsAffx.19483.1.S1_at2/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04380Os.55139.1.S1_at11/1111+1817917..1819505phosphate translocator, putative, expressed
LOC_Os11g04380OsAffx.19217.1.S1_x_at2/1111+1817917..1819505phosphate translocator, putative, expressed
LOC_Os11g04390Os.12347.1.S1_x_at11/1111+1820374..1827290RNA recognition motif family protein, expressed
LOC_Os11g04390Os.12347.4.S1_x_at10/1111+1820374..1827290RNA recognition motif family protein, expressed
LOC_Os11g04400Os.53517.2.S1_at1/1111+1828395..1831070GRAS family transcription factor containing protein
LOC_Os11g04409Os.4757.1.S1_at1/1111+1836657..1836818NA
LOC_Os11g04420Os.6869.1.S1_s_at11/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.6869.1.S1_at11/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.27194.1.A1_a_at9/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.27194.2.A1_x_at6/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420OsAffx.30813.1.A1_at4/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.12342.1.S2_at2/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.4757.1.S1_at2/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.12342.1.S1_at1/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04430NANA11+1846679..1846891hypothetical protein
LOC_Os11g04440Os.52082.1.S1_at10/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04440Os.52539.1.S1_at10/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04440OsAffx.18660.1.S1_at8/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04450OsAffx.30814.1.S1_at11/1111+1856166..1856636hypothetical protein
LOC_Os11g04460OsAffx.18661.2.S1_x_at11/1111+1858363..1864172Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os11g04460OsAffx.18661.1.S1_at2/1111+1858363..1864172Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os11g04470OsAffx.18662.1.S1_at11/1111+1864568..1865996hypothetical protein
LOC_Os11g04470OsAffx.10096.1.S1_x_at1/1111+1864568..1865996hypothetical protein
LOC_Os11g04480Os.10842.2.S1_at9/1111+1867964..1871274EF hand family protein, expressed
LOC_Os11g04480Os.10842.1.S1_x_at9/1111+1867964..1871274EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27194.1.A1_a_at--549--2471NONE
AACACGCGGCCAAGTGACAGGCTAA
NONE
Os.27194.1.A1_a_at--384--1831NONE
ACGCGGCCAAGTGACAGGCTAATGA
NONE
Os.27194.1.A1_a_at--444--7371Chr11:1838389..1838413 (25 bp)
GTGACAGGCTAATGAACGCAGCCTA
LOC_Os11g04420
Os.27194.1.A1_a_at--685--671Chr11:1838378..1838402 (25 bp)
ATGAACGCAGCCTAAGTTGGTGCAG
LOC_Os11g04420
Os.27194.1.A1_a_at--956--1831Chr11:1838374..1838398 (25 bp)
ACGCAGCCTAAGTTGGTGCAGTTGA
LOC_Os11g04420
Os.27194.1.A1_a_at--1144--4291Chr11:1838368..1838392 (25 bp)
CCTAAGTTGGTGCAGTTGAAGGCAA
LOC_Os11g04420
Os.27194.1.A1_a_at--983--10591Chr11:1838305..1838329 (25 bp)
TTCGGCACATGAGCTGCAACCTTCG
LOC_Os11g04420
Os.27194.1.A1_a_at--1008--3592Chr12:1774412..1774604 (25 bp)
CATTGCTCCACTGAAGGGAGATTTG
NONE
Os.27194.1.A1_a_at--758--3811Chr11:1838080..1838220 (25 bp)
CTCCACTGAAGGGAGATTTGGATCC
LOC_Os11g04420
Os.27194.1.A1_a_at--994--8751Chr11:1837799..1837823 (25 bp)
TGTTTCCCGTCAAGGCGTCAAATAC
LOC_Os11g04420
Os.27194.1.A1_a_at--95--4651Chr11:1837785..1837809 (25 bp)
GCGTCAAATACGCACAGTTTTTGTT
LOC_Os11g04420
Target Sequence 
AACACGCGGCCAAGTGACAGGCTAATGAACGCAGCCTAAGTTGGTGCAGTTGAAGGCAAAAATCTAATGTGATATTAAAT
CGNCAAAAATCAAGCACTTCGGCACATGAGCTGCAACCTTCGAGGACTCTNAACTTAAGTTAGTGGTTATGTGGTCTGGC
CTGTGGTTTTCCACTTATGAANTTGAAAGTTGNCTGTATCNCATTGCTCCACTGAAGGGAGATTTGGATCCNCAGTTACA
AGTTGCACTAAAAGGATATNTGGTGGCAAGAGGCGTTAACTCCAAACTGGCAAGCTCACTTCACCACCATTTGGTTGAGA
AGGAGCGGTGGCAATACATGANCTGGCTGAAAACTTTGGAAGACATGTTCAGCAAAGATCATTGACAAAAATATTTCCAG
CACTGAAGACCATTGAAATGTTTCCCGTCAAGGCGTCAAATACGCACAGTTTTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27194.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis