Browse Element(s) Details


OsAffx.30814.1.S1_at

Description tigr:9639.m00357
TID=OsAffx.30814.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0445011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04409Os.4757.1.S1_at1/1111+1836657..1836818NA
LOC_Os11g04420Os.6869.1.S1_s_at11/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.6869.1.S1_at11/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.27194.1.A1_a_at9/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.27194.2.A1_x_at6/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420OsAffx.30813.1.A1_at4/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.12342.1.S2_at2/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.4757.1.S1_at2/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.12342.1.S1_at1/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04430NANA11+1846679..1846891hypothetical protein
LOC_Os11g04440Os.52082.1.S1_at10/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04440Os.52539.1.S1_at10/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04440OsAffx.18660.1.S1_at8/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04450OsAffx.30814.1.S1_at11/1111+1856166..1856636hypothetical protein
LOC_Os11g04460OsAffx.18661.2.S1_x_at11/1111+1858363..1864172Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os11g04460OsAffx.18661.1.S1_at2/1111+1858363..1864172Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os11g04470OsAffx.18662.1.S1_at11/1111+1864568..1865996hypothetical protein
LOC_Os11g04470OsAffx.10096.1.S1_x_at1/1111+1864568..1865996hypothetical protein
LOC_Os11g04480Os.10842.2.S1_at9/1111+1867964..1871274EF hand family protein, expressed
LOC_Os11g04480Os.10842.1.S1_x_at9/1111+1867964..1871274EF hand family protein, expressed
LOC_Os11g04490Os.26862.3.S1_a_at11/1111+1878361..1880910saccharopine dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30814.1.S1_at--429--2076Chr11:16580584..16580608 (25 bp)
ACATGGGCCAAACACACACTACTAG
NONE
OsAffx.30814.1.S1_at--196--21910Chr11:16580599..16580623 (25 bp)
ACACTACTAGGCTTCAAACGGGCTG
NONE
OsAffx.30814.1.S1_at--957--21117Chr11:10274404..10274425 (22 bp)
ACAGGTCGAGATTGCCGATTGGGCC
NONE
OsAffx.30814.1.S1_at--1125--22713Chr12:8222050..8222071 (22 bp)
AAAGGCTGGGAATCGCGACTAGGTT
NONE
OsAffx.30814.1.S1_at--54--5113Chr12:8222058..8222082 (25 bp)
ATCGCGACTAGGTTGGAAAGGTGCT
NONE
OsAffx.30814.1.S1_at--503--55732Chr12:8222073..8222097 (25 bp)
GAAAGGTGCTGCAAATCCAAAGGAA
NONE
OsAffx.30814.1.S1_at--964--7658Chr05:12341867..12341886 (20 bp)
GGGATCTAGCTGGTGAGGACTTTAC
NONE
OsAffx.30814.1.S1_at--342--7391Chr11:1856353..1856377 (25 bp)
GTGAGGACTTTACCTCAGCGTACTC
LOC_Os11g04450
OsAffx.30814.1.S1_at--300--7013Chr02:17662075..17662099 (25 bp)
GTACTCAGCCGATGGCGCAGTAGAA
NONE
OsAffx.30814.1.S1_at--468--152Chr11:1856275..1856299 (25 bp)
ATTTGGTCGGGAACGAAATCGCCTG
LOC_Os11g04450
OsAffx.30814.1.S1_at--705--7975Chr11:11301581..11301843 (25 bp)
GGATCGCCTTGTGCGTCAGGAAGAT
NONE
Target Sequence 
ACATGGGCCAAACACACACTACTAGGCTTCAAACGGGCTGGGGTGTTACAGGTCGAGATTGCCGATTGGGCCAAGAAAAT
AGTAGTTTTTATGTGAAAGGCTGGGAATCGCGACTAGGTTGGAAAGGTGCTGCAAATCCAAAGGAATTGAGAAGCAGAAA
ACATGAGGAGAAAAGGAGAAATCGATTTCATGCGAGGAAAAGGGATCTAGCTGGTGAGGACTTTACCTCAGCGTACTCAG
CCGATGGCGCAGTAGAAGGGCTGGTGGACGACGACATCGTCGCGGGCGGAGATTTGGTCGGGAACGAAATCGCCTGGGGA
TCGCCTTGTGCGTCAGGAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30814.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis