Browse Element(s) Details


Os.12342.1.S2_at

Description gb:CB668460
DB_XREF= gi:29672185
DB_XREF=OSJNEd16F06.r
CLONE=OSJNEd16F06
TID=Os.12342.1
CNT=153
FEA=FLmRNA
TIER=Stack
STK=24
UG=Os.12342 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023139B04, full insert sequence
FL= gb:AK066751.1 gb:AK072775.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g044202/11Uncharacterised protein family containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04370Os.23431.1.A1_at11/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04370OsAffx.19483.1.S1_s_at10/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04370OsAffx.19483.1.S1_at2/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04380Os.55139.1.S1_at11/1111+1817917..1819505phosphate translocator, putative, expressed
LOC_Os11g04380OsAffx.19217.1.S1_x_at2/1111+1817917..1819505phosphate translocator, putative, expressed
LOC_Os11g04390Os.12347.1.S1_x_at11/1111+1820374..1827290RNA recognition motif family protein, expressed
LOC_Os11g04390Os.12347.4.S1_x_at10/1111+1820374..1827290RNA recognition motif family protein, expressed
LOC_Os11g04400Os.53517.2.S1_at1/1111+1828395..1831070GRAS family transcription factor containing protein
LOC_Os11g04409Os.4757.1.S1_at1/1111+1836657..1836818NA
LOC_Os11g04420Os.6869.1.S1_s_at11/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.6869.1.S1_at11/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.27194.1.A1_a_at9/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.27194.2.A1_x_at6/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420OsAffx.30813.1.A1_at4/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.12342.1.S2_at2/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.4757.1.S1_at2/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.12342.1.S1_at1/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04430NANA11+1846679..1846891hypothetical protein
LOC_Os11g04440Os.52082.1.S1_at10/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04440Os.52539.1.S1_at10/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04440OsAffx.18660.1.S1_at8/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04450OsAffx.30814.1.S1_at11/1111+1856166..1856636hypothetical protein
LOC_Os11g04460OsAffx.18661.2.S1_x_at11/1111+1858363..1864172Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os11g04460OsAffx.18661.1.S1_at2/1111+1858363..1864172Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os11g04470OsAffx.18662.1.S1_at11/1111+1864568..1865996hypothetical protein
LOC_Os11g04470OsAffx.10096.1.S1_x_at1/1111+1864568..1865996hypothetical protein
LOC_Os11g04480Os.10842.2.S1_at9/1111+1867964..1871274EF hand family protein, expressed
LOC_Os11g04480Os.10842.1.S1_x_at9/1111+1867964..1871274EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12342.1.S2_at--7--4592Chr12:1772246..1772270 (25 bp)
GCGCTTTTATGGTTGTCTTGTCAGA
NONE
Os.12342.1.S2_at--127--5671Chr12:1772216..1772240 (25 bp)
GACATGGCCATAGTTCTCCGAGAAT
NONE
Os.12342.1.S2_at--487--6571Chr12:1772079..1772103 (25 bp)
GATTCATTTGGCAGTTCTTTCGAAC
NONE
Os.12342.1.S2_at--619--5591Chr12:1772026..1772050 (25 bp)
GAAATCTTTTGACTACTTTGGGTGA
NONE
Os.12342.1.S2_at--855--8092Chr12:1771967..1771991 (25 bp)
GGACCTCAACATTATAAAGCCATCT
NONE
Os.12342.1.S2_at--575--8011Chr12:1771898..1771922 (25 bp)
GGAGGAGTTCTCAGTAGCAGTATTT
NONE
Os.12342.1.S2_at--1031--10231Chr12:1771876..1771900 (25 bp)
TTTGATTTCTACTTGGTCCAGCTTG
NONE
Os.12342.1.S2_at--512--7271Chr12:1771861..1771885 (25 bp)
GTCCAGCTTGCATCTCCAGTAGTAT
NONE
Os.12342.1.S2_at--1027--6931Chr12:1771843..1771867 (25 bp)
GTAGTATCCTTTACATATGGGCTTG
NONE
Os.12342.1.S2_at--1092--7571Chr12:1771825..1771849 (25 bp)
GGGCTTGTACTGTTCCATAACTAGC
NONE
Os.12342.1.S2_at--422--3271Chr12:1771782..1771806 (25 bp)
CAACATATGATTGGCCCTCTTGTAT
NONE
Target Sequence 
GCGCTTTTATGGTTGTCTTGTCAGAACATAGACATGGCCATAGTTCTCCGAGAATTTGACGTTAACTTGTTTACTTCCGG
AAAAGCTATATCAGTCAGTTATTAACTTGCTGTGAGGGTGGTTATGTAGTAACTAAGAAGACACATCCTAAAGTTTCTGT
GGTAGACGATTCATTTGGCAGTTCTTTCGAACAATATTACAAGGTTGTGAAGGTGATTCTGAAATCTTTTGACTACTTTG
GGTGAAATTAATTTGAAGATTTATTTCAAGAACATTTATGGACCTCAACATTATAAAGCCATCTGTTTGAAGTTTCTTCT
GAGTAGAAACAATTGCTTTATGAACCATGGAGGAGTTCTCAGTAGCAGTATTTGATTTCTACTTGGTCCAGCTTGCATCT
CCAGTAGTATCCTTTACATATGGGCTTGTACTGTTCCATAACTAGCTAGGATATGGGTTCATTTCAACATATGATTGGCC
CTCTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12342.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis