Browse Element(s) Details


OsAffx.19483.1.S1_at

Description tigr:9640.m00331
TID=OsAffx.19483.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=50S ribosomal protein L24
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g041607/11ribosomal protein L24 containing protein, expressed
LOC_Os11g043702/11ribosomal protein L24 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04110Os.6654.1.S1_at11/1112+1718705..1725257Cytochrome P450 family protein
LOC_Os12g04110OsAffx.24379.1.S1_at1/1112+1718705..1725257Cytochrome P450 family protein
LOC_Os12g04120OsAffx.31572.1.S1_at8/1112+1726835..1729563phosphoglycerate mutase family protein
LOC_Os12g04130OsAffx.30812.1.S1_at11/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04130OsAffx.30812.1.S1_x_at11/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04130Os.56229.1.S1_at5/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04130OsAffx.30812.2.S1_x_at1/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04140Os.50916.1.S1_at1/1112+1738759..1739846cell death associated protein, putative, expressed
LOC_Os12g04150Os.5943.1.S1_at11/1112+1744258..1745535cell death associated protein, putative, expressed
LOC_Os12g04160OsAffx.19483.1.S1_s_at11/1112+1746276..1749056ribosomal protein L24 containing protein, expressed
LOC_Os12g04160OsAffx.19483.1.S1_at7/1112+1746276..1749056ribosomal protein L24 containing protein, expressed
LOC_Os12g04160Os.23431.1.A1_at3/1112+1746276..1749056ribosomal protein L24 containing protein, expressed
LOC_Os12g04170Os.55139.1.S1_at3/1112+1750751..1752163phosphate translocator, putative, expressed
LOC_Os12g04170OsAffx.19217.1.S1_x_at2/1112+1750751..1752163phosphate translocator, putative, expressed
LOC_Os12g04180Os.12347.3.S1_at11/1112+1754561..1758696RNA recognition motif family protein, expressed
LOC_Os12g04180Os.12347.4.S1_x_at9/1112+1754561..1758696RNA recognition motif family protein, expressed
LOC_Os12g04200NANA12+1765096..1766963GRAS family transcription factor containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19483.1.S1_at--674--3811NONE
CTCCTCGGCTACGTGATGATCATAA
NONE
OsAffx.19483.1.S1_at--738--4851Chr12:1748732..1748751 (20 bp)
GCTACGTGATGATCATAAGAGGCAA
LOC_Os12g04160
OsAffx.19483.1.S1_at--264--6371Chr12:1747233..1747323 (25 bp)
GATCCAGTCACTGGTTTACTGGTAA
LOC_Os12g04160
OsAffx.19483.1.S1_at--737--3431Chr12:1747229..1747319 (25 bp)
CAGTCACTGGTTTACTGGTAAAAGG
LOC_Os12g04160
OsAffx.19483.1.S1_at--420--11Chr12:1747208..1747232 (25 bp)
AAGGTAAATTTATCCACACAACGCT
LOC_Os12g04160
OsAffx.19483.1.S1_at--58--10351Chr12:1747200..1747224 (25 bp)
TTTATCCACACAACGCTGGCAACAG
LOC_Os12g04160
OsAffx.19483.1.S1_at--170--2612Chr12:1747189..1747213 (25 bp)
AACGCTGGCAACAGGAAACCATGTA
LOC_Os12g04160
OsAffx.19483.1.S1_at--404--8512Chr12:1747184..1747208 (25 bp)
TGGCAACAGGAAACCATGTAAGATT
LOC_Os12g04160
OsAffx.19483.1.S1_at--791--1311NONE
AGATGGAACTAAAGTCAGCTGGCCC
NONE
OsAffx.19483.1.S1_at--1107--8151NONE
GGAACTAAAGTCAGCTGGCCCAAAG
NONE
OsAffx.19483.1.S1_at--1080--3711NONE
CTAAAGTCAGCTGGCCCAAAGGATA
NONE
Target Sequence 
CTCCTCGGCTACGTGATGATCATAAGAGGCAAGGACAAGGGGGAGAGCGGGCTCATCAAGCGGGTCATTCGGTCGCAGAA
CCGTGTCATCGTCGAGGGAAAGAATTTGGTTAAGAAACATATTAAGCAAGGAGAAGGACATACAGGTGGGATTTTCTCAA
TTGAAGCTCCACTTCATGTTTCAAATGTTCAAGTACTTGATCCAGTCACTGGTTTACTGGTAAAAGGTAAATTTATCCAC
ACAACGCTGGCAACAGGAAACCATGTAAGATTGGATACAAGTATTTGGAAGATGGAACTAAAGTCAGCTGGCCCAAAGGA
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19483.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis