Browse Element(s) Details


Os.12347.3.S1_at

Description gb:AK069493.1
DB_XREF= gi:32979517
TID=Os.12347.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12347 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 30848 putative RNA-binding protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023024M07, full insert sequence.
FL= gb:AK069493.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0418011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04120OsAffx.31572.1.S1_at8/1112+1726835..1729563phosphoglycerate mutase family protein
LOC_Os12g04130OsAffx.30812.1.S1_at11/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04130OsAffx.30812.1.S1_x_at11/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04130Os.56229.1.S1_at5/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04130OsAffx.30812.2.S1_x_at1/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04140Os.50916.1.S1_at1/1112+1738759..1739846cell death associated protein, putative, expressed
LOC_Os12g04150Os.5943.1.S1_at11/1112+1744258..1745535cell death associated protein, putative, expressed
LOC_Os12g04160OsAffx.19483.1.S1_s_at11/1112+1746276..1749056ribosomal protein L24 containing protein, expressed
LOC_Os12g04160OsAffx.19483.1.S1_at7/1112+1746276..1749056ribosomal protein L24 containing protein, expressed
LOC_Os12g04160Os.23431.1.A1_at3/1112+1746276..1749056ribosomal protein L24 containing protein, expressed
LOC_Os12g04170Os.55139.1.S1_at3/1112+1750751..1752163phosphate translocator, putative, expressed
LOC_Os12g04170OsAffx.19217.1.S1_x_at2/1112+1750751..1752163phosphate translocator, putative, expressed
LOC_Os12g04180Os.12347.3.S1_at11/1112+1754561..1758696RNA recognition motif family protein, expressed
LOC_Os12g04180Os.12347.4.S1_x_at9/1112+1754561..1758696RNA recognition motif family protein, expressed
LOC_Os12g04200NANA12+1765096..1766963GRAS family transcription factor containing protein
LOC_Os12g04210Os.52118.1.S1_at11/1112+1775603..1776673expressed protein
LOC_Os12g04220OsAffx.18661.1.S1_at11/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04220OsAffx.18661.2.S1_x_at8/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04220OsAffx.24652.1.S1_x_at1/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04220Os.38273.1.S1_at1/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12347.3.S1_at--350--9911Chr12:1758530..1758554 (25 bp)
TACTCGTCGATTTATTAGAGGAATG
LOC_Os12g04180
Os.12347.3.S1_at--334--4011Chr12:1758534..1758558 (25 bp)
CGTCGATTTATTAGAGGAATGCGTT
LOC_Os12g04180
Os.12347.3.S1_at--377--10191Chr12:1758582..1758606 (25 bp)
TATTTTACCTGTATCGCAGAGTGCT
LOC_Os12g04180
Os.12347.3.S1_at--527--171Chr12:1758583..1758607 (25 bp)
ATTTTACCTGTATCGCAGAGTGCTG
LOC_Os12g04180
Os.12347.3.S1_at--769--10371Chr12:1758584..1758608 (25 bp)
TTTTACCTGTATCGCAGAGTGCTGA
LOC_Os12g04180
Os.12347.3.S1_at--1080--10451Chr12:1758586..1758610 (25 bp)
TTACCTGTATCGCAGAGTGCTGAAT
LOC_Os12g04180
Os.12347.3.S1_at--551--9971Chr12:1758587..1758611 (25 bp)
TACCTGTATCGCAGAGTGCTGAATC
LOC_Os12g04180
Os.12347.3.S1_at--136--1771Chr12:1758588..1758612 (25 bp)
ACCTGTATCGCAGAGTGCTGAATCT
LOC_Os12g04180
Os.12347.3.S1_at--1071--4251Chr12:1758589..1758613 (25 bp)
CCTGTATCGCAGAGTGCTGAATCTG
LOC_Os12g04180
Os.12347.3.S1_at--897--3051Chr12:1758608..1758632 (25 bp)
AATCTGATGGTGCACTGGTACAGTA
LOC_Os12g04180
Os.12347.3.S1_at--20--491Chr12:1758609..1758633 (25 bp)
ATCTGATGGTGCACTGGTACAGTAT
LOC_Os12g04180
Target Sequence 
TACTCGTCGATTTATTAGAGGAATGCGTTTCTGAAACAAGACTGTACATGCGTATTTTACCTGTATCGCAGAGTGCTGAA
TCTGATGGTGCACTGGTACAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12347.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis