Browse Element(s) Details


Os.56229.1.S1_at

Description gb:AK109658.1
DB_XREF= gi:32994867
TID=Os.56229.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56229 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-F10, full insert sequence.
FL= gb:AK109658.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0433011/11Kelch motif family protein, expressed
LOC_Os12g041305/11Kelch motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04290Os.54318.1.S1_at11/1111+1774408..1776334Cytochrome P450 family protein, expressed
LOC_Os11g04300Os.46781.1.S1_at2/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300Os.6654.1.S1_at2/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300OsAffx.10222.1.S1_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300Os.51841.1.S1_x_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300OsAffx.24379.1.S1_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300OsAffx.10222.1.S1_x_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300Os.45902.1.A1_x_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04310NANA11+1794376..1795923Cytochrome P450 family protein
LOC_Os11g04320OsAffx.31572.1.S1_at11/1111+1797789..1799337phosphoglycerate mutase family protein, expressed
LOC_Os11g04330Os.56229.1.S1_at11/1111+1800185..1801663Kelch motif family protein, expressed
LOC_Os11g04340OsAffx.6993.1.S1_at11/1111+1804515..1805027hypothetical protein
LOC_Os11g04350Os.50916.1.S1_at11/1111+1807130..1808535HSR203J, putative, expressed
LOC_Os11g04360OsAffx.19482.2.S1_x_at11/1111+1810758..1812624cell death associated protein, putative
LOC_Os11g04360OsAffx.19482.1.S1_at5/1111+1810758..1812624cell death associated protein, putative
LOC_Os11g04360Os.5943.1.S1_at1/1111+1810758..1812624cell death associated protein, putative
LOC_Os11g04370Os.23431.1.A1_at11/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04370OsAffx.19483.1.S1_s_at10/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04370OsAffx.19483.1.S1_at2/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04380Os.55139.1.S1_at11/1111+1817917..1819505phosphate translocator, putative, expressed
LOC_Os11g04380OsAffx.19217.1.S1_x_at2/1111+1817917..1819505phosphate translocator, putative, expressed
LOC_Os11g04390Os.12347.1.S1_x_at11/1111+1820374..1827290RNA recognition motif family protein, expressed
LOC_Os11g04390Os.12347.4.S1_x_at10/1111+1820374..1827290RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56229.1.S1_at--277--4492Chr12:1732497..1732521 (25 bp)
GCCGGCGTCGAGTGCTGAGAATGTT
LOC_Os12g04130
Os.56229.1.S1_at--747--2991Chr11:1801507..1801531 (25 bp)
AATGTTGGTAGATGTGGTCCCCGTA
LOC_Os11g04330
Os.56229.1.S1_at--136--771Chr11:1801518..1801542 (25 bp)
ATGTGGTCCCCGTAGTTCAGTGAGA
LOC_Os11g04330
Os.56229.1.S1_at--885--7231Chr11:1801523..1801547 (25 bp)
GTCCCCGTAGTTCAGTGAGATTCGT
LOC_Os11g04330
Os.56229.1.S1_at--921--7371Chr11:1801537..1801561 (25 bp)
GTGAGATTCGTACTATTTGGTGGAT
LOC_Os11g04330
Os.56229.1.S1_at--462--3691Chr11:1801549..1801573 (25 bp)
CTATTTGGTGGATGGACAGCTTGGT
LOC_Os11g04330
Os.56229.1.S1_at--1--5192Chr12:1732591..1732613 (23 bp)
GCAATGTCAAGTAACATGGCGCCAT
LOC_Os12g04130
Os.56229.1.S1_at--1148--2492Chr12:1732601..1732625 (25 bp)
AACATGGCGCCATCGTGGGATTGTT
LOC_Os12g04130
Os.56229.1.S1_at--810--4412Chr12:1732609..1732633 (25 bp)
GCCATCGTGGGATTGTTTGTTGAAC
LOC_Os12g04130
Os.56229.1.S1_at--245--7911Chr11:1801631..1801655 (25 bp)
GGTTGCCACAAAATTTCTCCAGTTG
LOC_Os11g04330
Os.56229.1.S1_at--407--3272Chr12:1732664..1732683 (20 bp)
CAAAATTTCTCCAGTTGTTATTTAG
LOC_Os12g04130
Target Sequence 
GCCGGCGTCGAGTGCTGAGAATGTTGGTAGATGTGGTCCCCGTAGTTCAGTGAGATTCGTACTATTTGGTGGATGGACAG
CTTGGTGCAATGTCAAGTAACATGGCGCCATCGTGGGATTGTTTGTTGAACAGCAACTTGATTGGTTGCCACAAAATTTC
TCCAGTTGTTATTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56229.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis