Browse Element(s) Details


Os.46781.1.S1_at

Description gb:AB071809.1
DB_XREF= gi:15718400
GEN=OsSUT3
TID=Os.46781.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46781 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsSUT3 mRNA for sucrose transporter, complete cds.
PROD=sucrose transporter
FL= gb:AB071809.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2647011/11sucrose transporter 1, putative, expressed
LOC_Os04g244302/11Sucrose synthase 2, putative, expressed
LOC_Os11g043002/11phosphoglycerate mutase family protein, expressed
LOC_Os04g176502/11Sucrose synthase 2, putative
LOC_Os02g297202/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26430OsAffx.30543.1.S1_at11/1110+13424960..13431969Agenet domain containing protein
LOC_Os10g26430OsAffx.30543.2.S1_x_at8/1110+13424960..13431969Agenet domain containing protein
LOC_Os10g26430OsAffx.30543.2.S1_at8/1110+13424960..13431969Agenet domain containing protein
LOC_Os10g26440OsAffx.30544.1.S1_at10/1110+13433516..13434241hypothetical protein
LOC_Os10g26450NANA10+13434854..13435234hypothetical protein
LOC_Os10g26460NANA10+13442381..13442764hypothetical protein
LOC_Os10g26470Os.53224.1.S1_at11/1110+13447368..13453588sucrose transporter 1, putative, expressed
LOC_Os10g26470Os.46781.1.S1_at11/1110+13447368..13453588sucrose transporter 1, putative, expressed
LOC_Os10g26480OsAffx.30545.1.S1_at11/1110+13454423..13455100hypothetical protein
LOC_Os10g26480OsAffx.30633.1.S1_at1/1110+13454423..13455100hypothetical protein
LOC_Os10g26490OsAffx.23523.1.S1_at11/1110+13458065..13461532hypothetical protein
LOC_Os10g26490Os.45422.1.S1_x_at2/1110+13458065..13461532hypothetical protein
LOC_Os10g26500OsAffx.18415.1.S1_x_at11/1110+13473516..13474789HAHB-1, putative

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0005986biological_processsucrose biosynthesis
GO:0006118biological_processelectron transport
GO:0008152biological_processmetabolism
GO:0009409biological_processresponse to cold
GO:0009413biological_processresponse to flooding
GO:0009915biological_processphloem loading
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
GO:0005351molecular_functionsugar porter activity
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0008506molecular_functionsucrose:hydrogen symporter activity
GO:0008515molecular_functionsucrose transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0016157molecular_functionsucrose synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46781.1.S1_at--199--4271Chr10:13452988..13453012 (25 bp)
CCTGATCGAGCCGATGTGCCGTCGG
LOC_Os10g26470
Os.46781.1.S1_at--826--5671Chr10:13453103..13453127 (25 bp)
GACTTCGGCGGCTCGGTGCAGGACG
LOC_Os10g26470
Os.46781.1.S1_at--380--4651Chr10:13453422..13453446 (25 bp)
GCGTCGTCTTGCTGCCCAAGGTCTC
LOC_Os10g26470
Os.46781.1.S1_at--770--8331Chr10:13453469..13453493 (25 bp)
GGCGGCCACTGATCACTACTAGTCT
LOC_Os10g26470
Os.46781.1.S1_at--1095--8831Chr10:13453478..13453502 (25 bp)
TGATCACTACTAGTCTATCACCCTT
LOC_Os10g26470
Os.46781.1.S1_at--836--3311Chr10:13453482..13453506 (25 bp)
CACTACTAGTCTATCACCCTTTTTT
LOC_Os10g26470
Os.46781.1.S1_at--1117--92724Chr12:18598206..18598225 (20 bp)
TCCGTGGTTTTAAATCTCCCGCTAT
NONE
Os.46781.1.S1_at--878--39523Chr12:18598206..18598227 (22 bp)
CGTGGTTTTAAATCTCCCGCTATAG
NONE
Os.46781.1.S1_at--449--2276Chr11:6964863..6964986 (25 bp)
AAATCTCCCGCTATAGCTGCTGCTA
NONE
Os.46781.1.S1_at--1013--291Chr10:13453532..13453556 (25 bp)
ATAGCTGCTGCTATCTCCAGTTAGA
LOC_Os10g26470
Os.46781.1.S1_at--503--4871Chr10:13453541..13453565 (25 bp)
GCTATCTCCAGTTAGAGCGGGTACT
LOC_Os10g26470
Target Sequence 
CCTGATCGAGCCGATGTGCCGTCGGCTGGGCGCCCGCGCGGTGTGGGTGATGAGCAGCGCCGTCGTGTGCGTCGCCATGG
CGGCCGTCTCCGTGCTCAGCGCGTGGTCGCTCGGCGACTTCGGCGGCTCGGTGCAGGACGCAGCGCGGGCGCCGGCGGAG
GAGGGCGGCGTCAGGGCGTCGGCGCTGGCGCTCTTCGTCTTCCTCGGCCTCCCCTTCGCCGTCCTCTGCAGCGTCCCGTT
CGCCGTCACGGCGCAGCTCGCGGCGAGCCGCGGCGGCGGGCAGGGCCTCTGCACCGGCGTCCTCAACATCTCCATCGTCG
TGCCGCAGATGGCCATCGCCCTCGGCGCCGGGCCCTGGGACGAGCTGTTCGGGGAGGGGAACATCCCGGCGTTCGCCATG
GCGTCCGTGTTCGCCGCCGCGGCCGCCGCCGCCGGCGTCGTCTTGCTGCCCAAGGTCTCCGTCCGCTCCGTCAGCATGGC
CGGCGGCCACTGATCACTACTAGTCTATCACCCTTTTTTTTTCCGTGGTTTTAAATCTCCCGCTATAGCTGCTGCTATCT
CCAGTTAGAGCGGGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46781.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis