Browse Element(s) Details


OsAffx.30545.1.S1_at

Description tigr:9638.m02259
TID=OsAffx.30545.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2648011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26430OsAffx.30543.1.S1_at11/1110+13424960..13431969Agenet domain containing protein
LOC_Os10g26430OsAffx.30543.2.S1_x_at8/1110+13424960..13431969Agenet domain containing protein
LOC_Os10g26430OsAffx.30543.2.S1_at8/1110+13424960..13431969Agenet domain containing protein
LOC_Os10g26440OsAffx.30544.1.S1_at10/1110+13433516..13434241hypothetical protein
LOC_Os10g26450NANA10+13434854..13435234hypothetical protein
LOC_Os10g26460NANA10+13442381..13442764hypothetical protein
LOC_Os10g26470Os.53224.1.S1_at11/1110+13447368..13453588sucrose transporter 1, putative, expressed
LOC_Os10g26470Os.46781.1.S1_at11/1110+13447368..13453588sucrose transporter 1, putative, expressed
LOC_Os10g26480OsAffx.30545.1.S1_at11/1110+13454423..13455100hypothetical protein
LOC_Os10g26480OsAffx.30633.1.S1_at1/1110+13454423..13455100hypothetical protein
LOC_Os10g26490OsAffx.23523.1.S1_at11/1110+13458065..13461532hypothetical protein
LOC_Os10g26490Os.45422.1.S1_x_at2/1110+13458065..13461532hypothetical protein
LOC_Os10g26500OsAffx.18415.1.S1_x_at11/1110+13473516..13474789HAHB-1, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30545.1.S1_at--916--4131Chr10:13454572..13454596 (25 bp)
CGCCCACCACCGTAGTGAAGGGAGG
LOC_Os10g26480
OsAffx.30545.1.S1_at--494--1051Chr10:13454757..13454781 (25 bp)
AGGTGAGCCTCCCAGCAGCGGTGAA
LOC_Os10g26480
OsAffx.30545.1.S1_at--564--4611Chr10:13454795..13454819 (25 bp)
GCGAGCCGCCGGTCTGTAACCACGG
LOC_Os10g26480
OsAffx.30545.1.S1_at--479--871Chr10:13454870..13454894 (25 bp)
ATGGCCGTGGAGTTAGATGCACCAA
LOC_Os10g26480
OsAffx.30545.1.S1_at--731--10451Chr10:13454882..13454906 (25 bp)
TTAGATGCACCAAAGCAACGCGTGT
LOC_Os10g26480
OsAffx.30545.1.S1_at--493--2731Chr10:13454894..13454918 (25 bp)
AAGCAACGCGTGTGCATTGCGGTGT
LOC_Os10g26480
OsAffx.30545.1.S1_at--851--71Chr10:13454909..13454933 (25 bp)
ATTGCGGTGTGCTTGTCATCCCTGT
LOC_Os10g26480
OsAffx.30545.1.S1_at--36--7751Chr10:13454914..13454938 (25 bp)
GGTGTGCTTGTCATCCCTGTCGCTG
LOC_Os10g26480
OsAffx.30545.1.S1_at--417--5451Chr10:13454980..13455004 (25 bp)
GAACGCCACAGAGTCGCTCAGTGAA
LOC_Os10g26480
OsAffx.30545.1.S1_at--455--7231Chr10:13454992..13455016 (25 bp)
GTCGCTCAGTGAAAGGCGGTCCGCA
LOC_Os10g26480
OsAffx.30545.1.S1_at--820--7351Chr10:13455000..13455024 (25 bp)
GTGAAAGGCGGTCCGCACCCCGCTA
LOC_Os10g26480
Target Sequence 
CGCCCACCACCGTAGTGAAGGGAGGGAGGTGAGCCTCCCAGCAGCGGTGAAGGGAGCAACGCCCGCGAGCCGCCGGTCTG
TAACCACGGCGGGTCGGTTCACCAACGCCTCCACCAACGGCACCGCCACCAACAGGTTCATGGCCGTGGAGTTAGATGCA
CCAAAGCAACGCGTGTGCATTGCGGTGTGCTTGTCATCCCTGTCGCTGCCACCGTTGTCGGACCCCGGGGCCGACAACCC
ACCCTCGACGAACGCCACAGAGTCGCTCAGTGAAAGGCGGTCCGCACCCCGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30545.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis