Browse Element(s) Details


OsAffx.18415.1.S1_x_at

Description tigr:9638.m02261
TID=OsAffx.18415.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2650011/11HAHB-1, putative
LOC_Os03g074504/11DNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26470Os.53224.1.S1_at11/1110+13447368..13453588sucrose transporter 1, putative, expressed
LOC_Os10g26470Os.46781.1.S1_at11/1110+13447368..13453588sucrose transporter 1, putative, expressed
LOC_Os10g26480OsAffx.30545.1.S1_at11/1110+13454423..13455100hypothetical protein
LOC_Os10g26480OsAffx.30633.1.S1_at1/1110+13454423..13455100hypothetical protein
LOC_Os10g26490OsAffx.23523.1.S1_at11/1110+13458065..13461532hypothetical protein
LOC_Os10g26490Os.45422.1.S1_x_at2/1110+13458065..13461532hypothetical protein
LOC_Os10g26500OsAffx.18415.1.S1_x_at11/1110+13473516..13474789HAHB-1, putative
LOC_Os10g26510OsAffx.6772.1.S1_at11/1110+13480599..13482092hypothetical protein
LOC_Os10g26510Os.16463.1.S1_at2/1110+13480599..13482092hypothetical protein
LOC_Os10g26520Os.15059.1.S1_at11/1110+13492274..13497972serine/threonine-protein kinase NAK, putative, expressed
LOC_Os10g26520Os.18446.1.S1_at11/1110+13492274..13497972serine/threonine-protein kinase NAK, putative, expressed
LOC_Os10g26530OsAffx.20358.1.S1_at11/1110+13499491..13500190hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009653biological_processmorphogenesis
GO:0009738biological_processabscisic acid mediated signaling
GO:0009787biological_processregulation of abscisic acid mediated signaling
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18415.1.S1_x_at--690--9371Chr10:13473997..13474021 (25 bp)
TCGAGAAGGACTTCGACGCCCTCCG
LOC_Os10g26500
OsAffx.18415.1.S1_x_at--441--912Chr10:13474371..13474395 (25 bp)
AGGCGGCGTCGGAGCTGATCAACCT
LOC_Os10g26500
OsAffx.18415.1.S1_x_at--19--8091Chr10:13474381..13474405 (25 bp)
GGAGCTGATCAACCTCAACGTCAAG
LOC_Os10g26500
OsAffx.18415.1.S1_x_at--575--1932Chr10:13474409..13474433 (25 bp)
ACGGAGGCGTCGTGCAGCAACCGCA
LOC_Os10g26500
OsAffx.18415.1.S1_x_at--959--7192Chr10:13474417..13474441 (25 bp)
GTCGTGCAGCAACCGCAGCGAGAAC
LOC_Os10g26500
OsAffx.18415.1.S1_x_at--882--2611Chr10:13474427..13474451 (25 bp)
AACCGCAGCGAGAACAGCTCCGAGA
LOC_Os10g26500
OsAffx.18415.1.S1_x_at--915--4611Chr10:13474434..13474458 (25 bp)
GCGAGAACAGCTCCGAGATCAACCT
LOC_Os10g26500
OsAffx.18415.1.S1_x_at--612--4072Chr10:13474447..13474471 (25 bp)
CGAGATCAACCTCGACATCTCCAGG
LOC_Os10g26500
OsAffx.18415.1.S1_x_at--853--1851Chr10:13474503..13474527 (25 bp)
ACGAGAGCCCCGTCAACCGAGGCAT
LOC_Os10g26500
OsAffx.18415.1.S1_x_at--730--7051Chr10:13474514..13474538 (25 bp)
GTCAACCGAGGCATCCCGTTCTACG
LOC_Os10g26500
OsAffx.18415.1.S1_x_at--481--3491Chr10:13474560..13474584 (25 bp)
CAGGCGGCGTGGACATCGACCAGCT
LOC_Os10g26500
Target Sequence 
TCGAGAAGGACTTCGACGCCCTCCGCCGCCAGCTCGACGCCGCCCGCGCCGAGAACGACGCCCTCCTCTCCCTCAACTCC
AAGCTCCACGCCGAGATCGTGGCGCTGAAGGGGGGAGCGGCGGCGGCGGGGGGAGGAGGGAGCAGCTGCAGGCAGGAGGC
GGCGTCGGAGCTGATCAACCTCAACGTCAAGGAGACGGAGGCGTCGTGCAGCAACCGCAGCGAGAACAGCTCCGAGATCA
ACCTCGACATCTCCAGGCCGGCGCCGCCGCCGCCGCCGCCGCCGGCCAACGAGAGCCCCGTCAACCGAGGCATCCCGTTC
TACGCCTCCATCGGCCGCGGCGGCGCAGGCGGCGTGGACATCGACCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18415.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis