Browse Element(s) Details


Os.16463.1.S1_at

Description gb:AK109942.1
DB_XREF= gi:32995151
TID=Os.16463.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16463 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-154-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-154-F01, full insert sequence.
FL= gb:AK109942.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5831011/11expressed protein
LOC_Os10g265102/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58240Os.7635.1.S1_s_at11/114+34458466..34462684expressed protein
LOC_Os04g58240OsAffx.4209.1.S1_at11/114+34458466..34462684expressed protein
LOC_Os04g58250Os.53193.1.S1_at11/114+34461561..34466002protein kinase family protein, putative, expressed
LOC_Os04g58270Os.46300.1.S1_at9/114+34471063..34472908hypothetical protein
LOC_Os04g58280Os.37834.1.S1_a_at11/114+34475300..34477144Stem-specific protein TSJT1, putative, expressed
LOC_Os04g58290OsAffx.19542.3.S1_x_at2/114+34481250..34483032retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g58300NANA4+34483428..34485414retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g58310Os.16463.1.S1_at11/114+34487508..34488909expressed protein
LOC_Os04g58320Os.12918.2.S1_x_at11/114+34495653..34498205RNA-binding protein, putative, expressed
LOC_Os04g58320Os.12918.1.S1_s_at8/114+34495653..34498205RNA-binding protein, putative, expressed
LOC_Os04g58330Os.27014.1.S1_at11/114+34498821..34502184expressed protein
LOC_Os04g58340NANA4+34505240..34505710hypothetical protein
LOC_Os04g58350OsAffx.14466.1.S1_at11/114+34506072..34511325Transcription factor tfb2 family protein, expressed
LOC_Os04g58360OsAffx.26654.1.S1_x_at11/114+34511991..34512380hypothetical protein
LOC_Os04g58370OsAffx.14467.1.S1_at11/114+34513721..34514254hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16463.1.S1_at--454--8591Chr04:34487993..34488017 (25 bp)
TGGTCGACCTCCTGTACGCCGGCGA
LOC_Os04g58310
Os.16463.1.S1_at--767--492Chr05:17105173..17105355 (25 bp)
ATCGTCGTCGTTATCCTCCTTCTCG
NONE
Os.16463.1.S1_at--674--8111Chr04:34487869..34487893 (25 bp)
GGACGGGTACAAACACTATGCGCCA
LOC_Os04g58310
Os.16463.1.S1_at--589--7691Chr04:34487865..34487889 (25 bp)
GGGTACAAACACTATGCGCCAGCGC
LOC_Os04g58310
Os.16463.1.S1_at--299--2211Chr04:34487822..34487846 (25 bp)
ACAACAGGCAGATCATCGCGTGCCA
LOC_Os04g58310
Os.16463.1.S1_at--316--9371Chr04:34487687..34487711 (25 bp)
TCGACGTGCTCTGGGTTCTTCGCGA
LOC_Os04g58310
Os.16463.1.S1_at--106--8852Chr10:13481364..13481388 (25 bp)
TGATCTACCCATCGAATTTCTCATC
LOC_Os10g26510
Os.16463.1.S1_at--1152--5211Chr04:34487629..34487653 (25 bp)
GAATTTCTCATCAATTAATCCCAGT
LOC_Os04g58310
Os.16463.1.S1_at--914--9751Chr04:34487614..34487638 (25 bp)
TAATCCCAGTACTAAGCTTCGTTGA
LOC_Os04g58310
Os.16463.1.S1_at--1--4912Chr10:13481321..13481345 (25 bp)
GCTTCGTTGATGTACATACGAGGAC
LOC_Os10g26510
Os.16463.1.S1_at--70--9931Chr04:34487583..34487607 (25 bp)
TACGAGGACAAAAATTGCGACCATG
LOC_Os04g58310
Target Sequence 
TGGTCGACCTCCTGTACGCCGGCGACCCTTCGTCGTGGCCCCCCTCCCCCTCCTCCTCTTCCTCCTCCTCGTCGTCATCG
TCGTCGTTATCCTCCTTCTCGTCTTCCTCCGACGACGAGGCGGAGGACGGGTACAAACACTATGCGCCAGCGCCGTGCGC
GCGGCGAGACAACAACAGGCAGATCATCGCGTGCCACCCGGGGAGCTCGCTGGTGGCGGTGATGGCGCAGGCGGTCGCGC
ACCGCGTGACGCAGGTGTGGGTGGTGGACTTCGACGACGGCGAGCTGGTCGGCGTCGTCCGCTTCCTCGACGTGCTCTGG
GTTCTTCGCGAACACCTCAACCAACCACCCCCTGATCTACCCATCGAATTTCTCATCAATTAATCCCAGTACTAAGCTTC
GTTGATGTACATACGAGGACAAAAATTGCGACCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16463.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis