Browse Element(s) Details


Os.53193.1.S1_at

Description gb:AK071300.1
DB_XREF= gi:32981323
TID=Os.53193.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53193 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-047-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088H16, full insert sequence.
FL= gb:AK071300.1 gb:AK104911.1 gb:AK100266.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5825011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58190Os.15992.1.S1_at11/114+34435230..34437669Dof domain, zinc finger family protein, expressed
LOC_Os04g58190OsAffx.4206.1.S1_at11/114+34435230..34437669Dof domain, zinc finger family protein, expressed
LOC_Os04g58200Os.12363.1.S1_at11/114+34443989..34445518Protochlorophyllide reductase A, chloroplast precursor, putative, expressed
LOC_Os04g58210Os.53350.1.S1_at9/114+34445870..34449567Uncharacterized LmbE-like protein, COG2120 containing protein, expressed
LOC_Os04g58220NANA4+34450328..34452578Sugar transporter family protein
LOC_Os04g58230NANA4+34453776..34455771Sugar transporter family protein
LOC_Os04g58240Os.7635.1.S1_s_at11/114+34458466..34462684expressed protein
LOC_Os04g58240OsAffx.4209.1.S1_at11/114+34458466..34462684expressed protein
LOC_Os04g58250Os.53193.1.S1_at11/114+34461561..34466002protein kinase family protein, putative, expressed
LOC_Os04g58270Os.46300.1.S1_at9/114+34471063..34472908hypothetical protein
LOC_Os04g58280Os.37834.1.S1_a_at11/114+34475300..34477144Stem-specific protein TSJT1, putative, expressed
LOC_Os04g58290OsAffx.19542.3.S1_x_at2/114+34481250..34483032retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g58300NANA4+34483428..34485414retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g58310Os.16463.1.S1_at11/114+34487508..34488909expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53193.1.S1_at--130--8031Chr04:34462803..34462827 (25 bp)
GGAGGTCCTCCGGTACATCAAGACG
LOC_Os04g58250
Os.53193.1.S1_at--390--7591Chr04:34462671..34462695 (25 bp)
GGGCTACATCCACGACTACAATGGC
LOC_Os04g58250
Os.53193.1.S1_at--446--5711Chr04:34462658..34462682 (25 bp)
GACTACAATGGCACGGTCTCCAAGG
LOC_Os04g58250
Os.53193.1.S1_at--408--2551Chr04:34462619..34462643 (25 bp)
AACTCGAGGTTCAAGCACTCGGCGT
LOC_Os04g58250
Os.53193.1.S1_at--262--7451Chr04:34462553..34462577 (25 bp)
GTGTCCGAGATCAGCCCAAGGTGAA
LOC_Os04g58250
Os.53193.1.S1_at--192--6351Chr04:34462499..34462523 (25 bp)
GATGCTGATGCTGGGTCTATGTTTC
LOC_Os04g58250
Os.53193.1.S1_at--730--3691Chr04:34462483..34462507 (25 bp)
CTATGTTTCTTGTCTTACCTTTGCA
LOC_Os04g58250
Os.53193.1.S1_at--340--3051Chr04:34462402..34462426 (25 bp)
AATCGTGTTGTTTCTTTCCATTCCT
LOC_Os04g58250
Os.53193.1.S1_at--979--10652Chr08:17331759..17331778 (20 bp)
TTCCATTCCTTGTGCAAATTGCGGC
NONE
Os.53193.1.S1_at--545--2791Chr04:34462304..34462328 (25 bp)
AAGATCGCTGCTTGTTGGACATTAA
LOC_Os04g58250
Os.53193.1.S1_at--1130--5491Chr04:34462260..34462284 (25 bp)
GAACAGCTTCTGTAGACATGGCACA
LOC_Os04g58250
Target Sequence 
GGAGGTCCTCCGGTACATCAAGACGGCCCTCTTCTGCACGCAGGCGGCGGCGGCGCGGCGGCCGTCGATGCCGCAGGTGG
TGACGATGCTGTCCAAGCCCATCCGCATCAACGAGCGCGAGCTCACGGCGCCGGGCTACATCCACGACTACAATGGCACG
GTCTCCAAGGCCACCAACTCCAGCAACTCGAGGTTCAAGCACTCGGCGTCCGACACCTCCGACATGTTCAGCACGGTGGT
GCCACCCACGGTGTCCGAGATCAGCCCAAGGTGAAAATGGAAGGAAAACATCACCAGGCTGATTGATGCTGATGCTGGGT
CTATGTTTCTTGTCTTACCTTTGCATGTTGAGTTGAGTGACAGTGCATAGAGGGCACACGTTTAGATGTGTGCCAATTGT
GAATCGTGTTGTTTCTTTCCATTCCTTGTGCAAATTGCGGCATCTAGATCTTGTAAATAGTAGTAGGTTGATCCTGACTT
GTTTACGTCAGAGCAATTCAAGATCGCTGCTTGTTGGACATTAATTTTGGGGNCAATTGAACAGAACAGCTTCTGTAGAC
ATGGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis