Browse Element(s) Details


Os.12363.1.S1_at

Description gb:AK065236.1
DB_XREF= gi:32975254
TID=Os.12363.1
CNT=188
FEA=FLmRNA
TIER=FL+Stack
STK=82
UG=Os.12363 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-043-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002H23, full insert sequence.
FL= gb:AK104855.1 gb:AK065236.1 gb:AK103943.1 gb:AK103940.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5820011/11Protochlorophyllide reductase A, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58150Os.35344.18.S1_x_at11/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58150Os.35344.3.S1_x_at9/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58150OsAffx.22940.5.S1_x_at3/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58160OsAffx.26653.1.S1_at10/114+34420813..34421922hypothetical protein
LOC_Os04g58170Os.18359.1.S1_at11/114+34423741..34425446fiber protein Fb34, putative, expressed
LOC_Os04g58180Os.32813.1.A1_at11/114+34430540..34436142WD-40 repeat family protein, putative, expressed
LOC_Os04g58190Os.15992.1.S1_at11/114+34435230..34437669Dof domain, zinc finger family protein, expressed
LOC_Os04g58190OsAffx.4206.1.S1_at11/114+34435230..34437669Dof domain, zinc finger family protein, expressed
LOC_Os04g58200Os.12363.1.S1_at11/114+34443989..34445518Protochlorophyllide reductase A, chloroplast precursor, putative, expressed
LOC_Os04g58210Os.53350.1.S1_at9/114+34445870..34449567Uncharacterized LmbE-like protein, COG2120 containing protein, expressed
LOC_Os04g58220NANA4+34450328..34452578Sugar transporter family protein
LOC_Os04g58230NANA4+34453776..34455771Sugar transporter family protein
LOC_Os04g58240Os.7635.1.S1_s_at11/114+34458466..34462684expressed protein
LOC_Os04g58240OsAffx.4209.1.S1_at11/114+34458466..34462684expressed protein
LOC_Os04g58250Os.53193.1.S1_at11/114+34461561..34466002protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015995biological_processchlorophyll biosynthesis
GO:0009507cellular_componentchloroplast
GO:0016491molecular_functionoxidoreductase activity
GO:0016630molecular_functionprotochlorophyllide reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12363.1.S1_at--802--711Chr04:34444926..34444950 (25 bp)
ATGATCGACGGCGCGGAGAGCTTCG
LOC_Os04g58200
Os.12363.1.S1_at--714--5171Chr04:34444975..34444999 (25 bp)
GCAAGATCTGTAACATGCTGACGAT
LOC_Os04g58200
Os.12363.1.S1_at--988--3211Chr04:34444976..34445000 (25 bp)
CAAGATCTGTAACATGCTGACGATG
LOC_Os04g58200
Os.12363.1.S1_at--1048--6571Chr04:34445017..34445041 (25 bp)
GATTCCACGAGGAGACCGGGATCAC
LOC_Os04g58200
Os.12363.1.S1_at--1143--10671Chr04:34445019..34445043 (25 bp)
TTCCACGAGGAGACCGGGATCACGT
LOC_Os04g58200
Os.12363.1.S1_at--818--9211Chr04:34445020..34445044 (25 bp)
TCCACGAGGAGACCGGGATCACGTT
LOC_Os04g58200
Os.12363.1.S1_at--462--911Chr04:34445026..34445050 (25 bp)
AGGAGACCGGGATCACGTTCGCGTC
LOC_Os04g58200
Os.12363.1.S1_at--380--8751Chr04:34445053..34445077 (25 bp)
TGTACCCGGGGTGCATCGCGACGAC
LOC_Os04g58200
Os.12363.1.S1_at--167--8771Chr04:34445116..34445140 (25 bp)
TGTTCCCGCCGTTCCAGCGGTTCGT
LOC_Os04g58200
Os.12363.1.S1_at--81--4511Chr04:34445123..34445147 (25 bp)
GCCGTTCCAGCGGTTCGTGACGAAG
LOC_Os04g58200
Os.12363.1.S1_at--55--4231Chr04:34445124..34445148 (25 bp)
CCGTTCCAGCGGTTCGTGACGAAGG
LOC_Os04g58200
Target Sequence 
ATGATCGACGGCGCGGAGAGCTTCGACGGCGCCAAGGCGTACAAGGACAGCAAGATCTGTAACATGCTGACGATGCAGGA
GTTCCACCGGAGATTCCACGAGGAGACCGGGATCACGTTCGCGTCGCTGTACCCGGGGTGCATCGCGACGACGGGCTTGT
TCCGCGAGCACATCCCGCTGTTCCGGCTGCTGTTCCCGCCGTTCCAGCGGTTCGTGACGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12363.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis