Browse Element(s) Details


OsAffx.4209.1.S1_at

Description tigr:9632.m05691
TID=OsAffx.4209.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5824011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58180Os.32813.1.A1_at11/114+34430540..34436142WD-40 repeat family protein, putative, expressed
LOC_Os04g58190Os.15992.1.S1_at11/114+34435230..34437669Dof domain, zinc finger family protein, expressed
LOC_Os04g58190OsAffx.4206.1.S1_at11/114+34435230..34437669Dof domain, zinc finger family protein, expressed
LOC_Os04g58200Os.12363.1.S1_at11/114+34443989..34445518Protochlorophyllide reductase A, chloroplast precursor, putative, expressed
LOC_Os04g58210Os.53350.1.S1_at9/114+34445870..34449567Uncharacterized LmbE-like protein, COG2120 containing protein, expressed
LOC_Os04g58220NANA4+34450328..34452578Sugar transporter family protein
LOC_Os04g58230NANA4+34453776..34455771Sugar transporter family protein
LOC_Os04g58240Os.7635.1.S1_s_at11/114+34458466..34462684expressed protein
LOC_Os04g58240OsAffx.4209.1.S1_at11/114+34458466..34462684expressed protein
LOC_Os04g58250Os.53193.1.S1_at11/114+34461561..34466002protein kinase family protein, putative, expressed
LOC_Os04g58270Os.46300.1.S1_at9/114+34471063..34472908hypothetical protein
LOC_Os04g58280Os.37834.1.S1_a_at11/114+34475300..34477144Stem-specific protein TSJT1, putative, expressed
LOC_Os04g58290OsAffx.19542.3.S1_x_at2/114+34481250..34483032retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g58300NANA4+34483428..34485414retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g58310Os.16463.1.S1_at11/114+34487508..34488909expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4209.1.S1_at--829--1411Chr04:34462168..34462192 (25 bp)
AGACACGATTTCTTCCCTGTGGATA
LOC_Os04g58240
OsAffx.4209.1.S1_at--129--8711Chr04:34462260..34462284 (25 bp)
TGTGCCATGTCTACAGAAGCTGTTC
LOC_Os04g58240
OsAffx.4209.1.S1_at--476--1451Chr04:34462274..34462298 (25 bp)
AGAAGCTGTTCTGTTCAATTGCCCC
LOC_Os04g58240
OsAffx.4209.1.S1_at--557--4631Chr04:34462321..34462345 (25 bp)
GCGATCTTGAATTGCTCTGACGTAA
LOC_Os04g58240
OsAffx.4209.1.S1_at--395--9831Chr04:34462444..34462468 (25 bp)
TAAACGTGTGCCCTCTATGCACTGT
LOC_Os04g58240
OsAffx.4209.1.S1_at--777--10131Chr04:34462459..34462483 (25 bp)
TATGCACTGTCACTCAACTCAACAT
LOC_Os04g58240
OsAffx.4209.1.S1_at--893--5531Chr04:34462499..34462523 (25 bp)
GAAACATAGACCCAGCATCAGCATC
LOC_Os04g58240
OsAffx.4209.1.S1_at--411--4971Chr04:34462513..34462537 (25 bp)
GCATCAGCATCAATCAGCCTGGTGA
LOC_Os04g58240
OsAffx.4209.1.S1_at--979--8611Chr04:34462532..34462556 (25 bp)
TGGTGATGTTTTCCTTCCATTTTCA
LOC_Os04g58240
OsAffx.4209.1.S1_at--70--10531Chr04:34462553..34462577 (25 bp)
TTCACCTTGGGCTGATCTCGGACAC
LOC_Os04g58240
OsAffx.4209.1.S1_at--442--1111Chr04:34462625..34462649 (25 bp)
AGTGCTTGAACCTCGAGTTGCTGGA
LOC_Os04g58240
Target Sequence 
AGACACGATTTCTTCCCTGTGGATACTCTGTGATCATAAGTTCAGAACTGAAAGCGCAACTGAGTGATGGATTATACACG
ATTTCTCTCTCCTGTGCCATGTCTACAGAAGCTGTTCTGTTCAATTGCCCCCAAAATTAATGTCCAACAAGCAGCGATCT
TGAATTGCTCTGACGTAAACAAGTCAGGATCAACCTACTACTATTTACAAGATCTAGATGCCGCAATTTGCACAAGGAAT
GGAAAGAAACAACACGATTCACAATTGGCACACATCTAAACGTGTGCCCTCTATGCACTGTCACTCAACTCAACATGCAA
AGGTAAGACAAGAAACATAGACCCAGCATCAGCATCAATCAGCCTGGTGATGTTTTCCTTCCATTTTCACCTTGGGCTGA
TCTCGGACACCGTGGGTGGCACCACCGTGCTGAACATGTCGGAGGTGTCGGACGCCGAGTGCTTGAACCTCGAGTTGCTG
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4209.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis