Browse Element(s) Details


Os.37834.1.S1_a_at

Description gb:AK121152.1
DB_XREF= gi:37990775
TID=Os.37834.1
CNT=194
FEA=FLmRNA
TIER=FL+Stack
STK=89
UG=Os.37834 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078J16, full insert sequence.
FL= gb:AK120508.1 gb:AK099975.1 gb:AK121152.1 gb:AK104249.1 gb:AK065314.1 gb:AK099087.1 gb:AK119666.1 gb:AK099009.1 gb:AK099653.1 gb:AK099368.1 gb:AK104376.1 gb:AK106133.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5828011/11Stem-specific protein TSJT1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58220NANA4+34450328..34452578Sugar transporter family protein
LOC_Os04g58230NANA4+34453776..34455771Sugar transporter family protein
LOC_Os04g58240Os.7635.1.S1_s_at11/114+34458466..34462684expressed protein
LOC_Os04g58240OsAffx.4209.1.S1_at11/114+34458466..34462684expressed protein
LOC_Os04g58250Os.53193.1.S1_at11/114+34461561..34466002protein kinase family protein, putative, expressed
LOC_Os04g58270Os.46300.1.S1_at9/114+34471063..34472908hypothetical protein
LOC_Os04g58280Os.37834.1.S1_a_at11/114+34475300..34477144Stem-specific protein TSJT1, putative, expressed
LOC_Os04g58290OsAffx.19542.3.S1_x_at2/114+34481250..34483032retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g58300NANA4+34483428..34485414retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g58310Os.16463.1.S1_at11/114+34487508..34488909expressed protein
LOC_Os04g58320Os.12918.2.S1_x_at11/114+34495653..34498205RNA-binding protein, putative, expressed
LOC_Os04g58320Os.12918.1.S1_s_at8/114+34495653..34498205RNA-binding protein, putative, expressed
LOC_Os04g58330Os.27014.1.S1_at11/114+34498821..34502184expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37834.1.S1_a_at--371--7311Chr04:34475861..34475885 (25 bp)
GTGCGGCAAGTCGTACGCGCCGTTC
LOC_Os04g58280
Os.37834.1.S1_a_at--724--5931Chr04:34475791..34475815 (25 bp)
GAGCACCCGATGAACCGGCTGAAGG
LOC_Os04g58280
Os.37834.1.S1_a_at--921--1072Chr05:28482433..28482467 (24 bp)
AGGGCGTCATGTGCGGCGCCACCTT
NONE
Os.37834.1.S1_a_at--616--2531Chr04:34475665..34475689 (25 bp)
AACTGGGCCGCCACCTGGGACGACG
LOC_Os04g58280
Os.37834.1.S1_a_at--1159--5791Chr04:34475644..34475668 (25 bp)
GACGCTGCCGCCTGATGATGGCGCT
LOC_Os04g58280
Os.37834.1.S1_a_at--914--9251Chr04:34475526..34475550 (25 bp)
TCCTCTCTATATCCGATGTGCTTCT
LOC_Os04g58280
Os.37834.1.S1_a_at--670--7251Chr04:34475499..34475523 (25 bp)
GTCCGAAGCATGCAGATTATTAGAG
LOC_Os04g58280
Os.37834.1.S1_a_at--1122--10011Chr04:34475479..34475503 (25 bp)
TAGAGCGATATTTGCAGCTAGCGTG
LOC_Os04g58280
Os.37834.1.S1_a_at--372--1571Chr04:34475464..34475488 (25 bp)
AGCTAGCGTGGAAGCGCGCCAATCT
LOC_Os04g58280
Os.37834.1.S1_a_at--87--8191Chr04:34475455..34475479 (25 bp)
GGAAGCGCGCCAATCTATTTTTCTG
LOC_Os04g58280
Os.37834.1.S1_a_at--204--4391Chr04:34475447..34475471 (25 bp)
GCCAATCTATTTTTCTGCGGTGTTT
LOC_Os04g58280
Target Sequence 
GTGCGGCAAGTCGTACGCGCCGTTCCCGGTGGGGTGCATGTTCCACAGCGAGGGGGGGCTCAAGAGCTTCGAGCACCCGA
TGAACCGGCTGAAGGCGATGCCGCGGGTGGACAGCGAGGGCGTCATGTGCGGCGCCACCTTCAAGGTCGACACCTTCACC
AAGATCAACTCCATGCCCCGCGTCGGCAGCGCCACCAACTGGGCCGCCACCTGGGACGACGCTGCCGCCTGATGATGGCG
CTCCGTACGCCGTCGTCTCGTCGCCGTGCGCCTGCCCTCGCCGCCGGCCTCCTCGCCGTTTGCCGCCGCCGCTCATCTCT
TCCTCCTCTTCTTCCTCCTCTCTATATCCGATGTGCTTCTCCAGTCCGAAGCATGCAGATTATTAGAGCGATATTTGCAG
CTAGCGTGGAAGCGCGCCAATCTATTTTTCTGCGGTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37834.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis