Browse Element(s) Details


Os.27014.1.S1_at

Description gb:AK069950.1
DB_XREF= gi:32979974
TID=Os.27014.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27014 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-212-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023034M14, full insert sequence.
FL= gb:AK069950.1 gb:AK104163.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5833011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58280Os.37834.1.S1_a_at11/114+34475300..34477144Stem-specific protein TSJT1, putative, expressed
LOC_Os04g58290OsAffx.19542.3.S1_x_at2/114+34481250..34483032retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g58300NANA4+34483428..34485414retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g58310Os.16463.1.S1_at11/114+34487508..34488909expressed protein
LOC_Os04g58320Os.12918.2.S1_x_at11/114+34495653..34498205RNA-binding protein, putative, expressed
LOC_Os04g58320Os.12918.1.S1_s_at8/114+34495653..34498205RNA-binding protein, putative, expressed
LOC_Os04g58330Os.27014.1.S1_at11/114+34498821..34502184expressed protein
LOC_Os04g58340NANA4+34505240..34505710hypothetical protein
LOC_Os04g58350OsAffx.14466.1.S1_at11/114+34506072..34511325Transcription factor tfb2 family protein, expressed
LOC_Os04g58360OsAffx.26654.1.S1_x_at11/114+34511991..34512380hypothetical protein
LOC_Os04g58370OsAffx.14467.1.S1_at11/114+34513721..34514254hypothetical protein
LOC_Os04g58380Os.27077.1.A1_at10/114+34514531..34517028expressed protein
LOC_Os04g58390Os.18070.1.S1_at4/114+34519017..34523242allantoinase, putative, expressed
LOC_Os04g58390Os.30557.2.S2_x_at1/114+34519017..34523242allantoinase, putative, expressed
LOC_Os04g58400OsAffx.14468.1.S1_at8/114+34524408..34530702tRNA synthetases class I family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27014.1.S1_at--471--2951Chr04:34499674..34499698 (25 bp)
AATGGATAGGCCTCTCGGTTGTCGC
LOC_Os04g58330
Os.27014.1.S1_at--424--9351Chr04:34499414..34499677 (25 bp)
TCGCTGCCCAGGTGTTGTCAATCGT
LOC_Os04g58330
Os.27014.1.S1_at--471--10551Chr04:34499390..34499414 (25 bp)
TTCTTGGAATGGTACTTAGGGCTCT
LOC_Os04g58330
Os.27014.1.S1_at--169--1091Chr04:34499373..34499397 (25 bp)
AGGGCTCTTGGACCTGACCGTGAAA
LOC_Os04g58330
Os.27014.1.S1_at--323--5191Chr04:34499313..34499337 (25 bp)
GCAAGGCTGCCTTTACTAAGAAACC
LOC_Os04g58330
Os.27014.1.S1_at--166--6251Chr04:34499071..34499095 (25 bp)
GATGGAGCTATCACCATGCTTCGGC
LOC_Os04g58330
Os.27014.1.S1_at--421--8431Chr04:34499049..34499073 (25 bp)
GGCCTGAAGGTTTAGCTCGACATGA
LOC_Os04g58330
Os.27014.1.S1_at--1043--8291Chr04:34498979..34499003 (25 bp)
GGCTTCTTTTGATTGCCTAAACATG
LOC_Os04g58330
Os.27014.1.S1_at--672--8891Chr04:34498944..34498968 (25 bp)
TGAGTAGCATGCAACTGACCCTTAC
LOC_Os04g58330
Os.27014.1.S1_at--434--2131Chr04:34498870..34498894 (25 bp)
ACAGATGATGGCGTGATTCCGTCAC
LOC_Os04g58330
Os.27014.1.S1_at--227--10811Chr04:34498822..34498846 (25 bp)
TTGTAGTCCGTCGAGCTGTCTGATC
LOC_Os04g58330
Target Sequence 
AATGGATAGGCCTCTCGGTTGTCGCTGCCCAGGTGTTGTCAATCGTTCTTGGAATGGTACTTAGGGCTCTTGGACCTGAC
CGTGAAAGTGACTATGATAGCGACGACGACCCCTCTGTGCCTGCAAGGCTGCCTTTACTAAGAAACCAGTACCAACATGG
CATAAACTATTCTGAACATACCTTACCTCAAAGTAGTGATTCATGGAGTTTGCGGATTTTAGATAAGGCTAACAAATGAA
AATTTTCTGACGATGAACCTTTGGATGGAGCTATCACCATGCTTCGGCCTGAAGGTTTAGCTCGACATGAGGAAATGATA
CCCTTCTTTTTTTTTTTCTAGGTAGCAATATTGAATGGCTTCTTTTGATTGCCTAAACATGCACAACTATTTGAGTAGCA
TGCAACTGACCCTTACAGCCCCTTGATGTTATGGGAAGAATGTTGTATTTTACAGTGCTTCAGAAACAGATGATGGCGTG
ATTCCGTCACTGNCAAAAACACAGTTGAATGTTTTGTAGTCCGTCGAGCTGTCTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27014.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis