Browse Element(s) Details


OsAffx.14466.1.S1_at

Description tigr:9632.m05703
TID=OsAffx.14466.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5835011/11Transcription factor tfb2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58290OsAffx.19542.3.S1_x_at2/114+34481250..34483032retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g58300NANA4+34483428..34485414retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g58310Os.16463.1.S1_at11/114+34487508..34488909expressed protein
LOC_Os04g58320Os.12918.2.S1_x_at11/114+34495653..34498205RNA-binding protein, putative, expressed
LOC_Os04g58320Os.12918.1.S1_s_at8/114+34495653..34498205RNA-binding protein, putative, expressed
LOC_Os04g58330Os.27014.1.S1_at11/114+34498821..34502184expressed protein
LOC_Os04g58340NANA4+34505240..34505710hypothetical protein
LOC_Os04g58350OsAffx.14466.1.S1_at11/114+34506072..34511325Transcription factor tfb2 family protein, expressed
LOC_Os04g58360OsAffx.26654.1.S1_x_at11/114+34511991..34512380hypothetical protein
LOC_Os04g58370OsAffx.14467.1.S1_at11/114+34513721..34514254hypothetical protein
LOC_Os04g58380Os.27077.1.A1_at10/114+34514531..34517028expressed protein
LOC_Os04g58390Os.18070.1.S1_at4/114+34519017..34523242allantoinase, putative, expressed
LOC_Os04g58390Os.30557.2.S2_x_at1/114+34519017..34523242allantoinase, putative, expressed
LOC_Os04g58400OsAffx.14468.1.S1_at8/114+34524408..34530702tRNA synthetases class I family protein, expressed
LOC_Os04g58410Os.17778.2.S1_x_at11/114+34532434..34536998MutS domain V family protein, expressed
LOC_Os04g58410Os.17778.2.S1_at11/114+34532434..34536998MutS domain V family protein, expressed
LOC_Os04g58410Os.17778.1.S1_at11/114+34532434..34536998MutS domain V family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14466.1.S1_at--118--8591Chr04:34509656..34509751 (25 bp)
TGGTCAAACTTCAGCAGGGTCGAAA
LOC_Os04g58350
OsAffx.14466.1.S1_at--438--2931Chr04:34509750..34509774 (25 bp)
AAGGACAGCTGGTTCATACCTACAA
LOC_Os04g58350
OsAffx.14466.1.S1_at--350--8311Chr04:34509779..34509803 (25 bp)
GGCTACAAATCTCTCAGCAAGCTTG
LOC_Os04g58350
OsAffx.14466.1.S1_at--697--2251Chr04:34509997..34510021 (25 bp)
AAATTTCCGGATGTATGCGTACTCA
LOC_Os04g58350
OsAffx.14466.1.S1_at--823--6911Chr04:34510009..34510033 (25 bp)
GTATGCGTACTCAACTTCCAGATTA
LOC_Os04g58350
OsAffx.14466.1.S1_at--903--5591Chr04:34510040..34510062 (23 bp)
GAAATTCTGCGCCTTTTTTCAAGAG
LOC_Os04g58350
OsAffx.14466.1.S1_at--499--10771Chr04:34510723..34510747 (25 bp)
TTGAGAATGGGATTACCGCTGAACA
LOC_Os04g58350
OsAffx.14466.1.S1_at--701--3431Chr04:34510825..34510849 (25 bp)
CAGATAATTTCATTCCTTCAGCAGA
LOC_Os04g58350
OsAffx.14466.1.S1_at--658--1471Chr04:34510847..34510871 (25 bp)
AGAATGCTCATCCTCGTGTTGCTGA
LOC_Os04g58350
OsAffx.14466.1.S1_at--311--6491Chr04:34510875..34510899 (25 bp)
GATACCTGCAGTCCCAGAGAACGTT
LOC_Os04g58350
OsAffx.14466.1.S1_at--776--7671Chr04:34511018..34511042 (25 bp)
GGGTTGATATGACCCTATCGCATTT
LOC_Os04g58350
Target Sequence 
TGGTCAAACTTCAGCAGGGTCGAAAGGACAGCTGGTTCATACCTACAAAACTGGCTACAAATCTCTCAGCAAGCTTGTCA
GATTCATCGTCTAACAAAGAGGGTTTTGTAGTTGTGGAGACAAATTTCCGGATGTATGCGTACTCAACTTCCAGATTACA
TTGTGAAATTCTGCGCCTTTTTTCAAGAGTGGAGTATCAACTTCCAAACCTAATTGTGGGATCTATTACAAAAGAAAGTC
TTTATGGTGCTTTTGAGAATGGGATTACCGCTGAACAGATAATTTCATTCCTTCAGCAGAATGCTCATCCTCGTGTTGCT
GACAAGATACCTGCAGTCCCAGAGAACGTTACAGATCAGATTAGGTTGTGGGAAACGGATCGTAACAGGGTTGATATGAC
CCTATCGCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14466.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis