Browse Element(s) Details


OsAffx.14468.1.S1_at

Description tigr:9632.m05708
TID=OsAffx.14468.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=tyrosyl-tRNA synthetase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g584008/11tRNA synthetases class I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58330Os.27014.1.S1_at11/114+34498821..34502184expressed protein
LOC_Os04g58340NANA4+34505240..34505710hypothetical protein
LOC_Os04g58350OsAffx.14466.1.S1_at11/114+34506072..34511325Transcription factor tfb2 family protein, expressed
LOC_Os04g58360OsAffx.26654.1.S1_x_at11/114+34511991..34512380hypothetical protein
LOC_Os04g58370OsAffx.14467.1.S1_at11/114+34513721..34514254hypothetical protein
LOC_Os04g58380Os.27077.1.A1_at10/114+34514531..34517028expressed protein
LOC_Os04g58390Os.18070.1.S1_at4/114+34519017..34523242allantoinase, putative, expressed
LOC_Os04g58390Os.30557.2.S2_x_at1/114+34519017..34523242allantoinase, putative, expressed
LOC_Os04g58400OsAffx.14468.1.S1_at8/114+34524408..34530702tRNA synthetases class I family protein, expressed
LOC_Os04g58410Os.17778.2.S1_x_at11/114+34532434..34536998MutS domain V family protein, expressed
LOC_Os04g58410Os.17778.2.S1_at11/114+34532434..34536998MutS domain V family protein, expressed
LOC_Os04g58410Os.17778.1.S1_at11/114+34532434..34536998MutS domain V family protein, expressed
LOC_Os04g58420Os.17079.1.S1_at11/114+34542155..34544423MLO-like protein 14, putative, expressed
LOC_Os04g58420OsAffx.14469.1.S1_x_at11/114+34542155..34544423MLO-like protein 14, putative, expressed
LOC_Os04g58430NANA4+34546356..34547261hypothetical protein
LOC_Os04g58440NANA4+34548256..34549160hypothetical protein
LOC_Os04g58450OsAffx.20387.1.S1_x_at1/114+34549967..34556167retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14468.1.S1_at--203--9271Chr04:34528741..34528765 (25 bp)
TCCTGGACGGACTATCTTCATGCTA
LOC_Os04g58400
OsAffx.14468.1.S1_at--1118--2251Chr04:34527868..34527892 (25 bp)
AAATAAGTTGTGCTTTCTGCCCTTC
LOC_Os04g58400
OsAffx.14468.1.S1_at--177--4551Chr04:34527850..34527874 (25 bp)
GCCCTTCGAGAGTAGTAGCATGCAA
LOC_Os04g58400
OsAffx.14468.1.S1_at--138--1531Chr04:34527834..34527858 (25 bp)
AGCATGCAACCCATGTTTGGAGTAT
LOC_Os04g58400
OsAffx.14468.1.S1_at--1063--331Chr04:34527809..34527833 (25 bp)
ATAAAATCTGTTGTCCTTCCTTGGT
LOC_Os04g58400
OsAffx.14468.1.S1_at--168--2871Chr04:34527530..34527554 (25 bp)
AAGTGGCGATCTTGACTCTTTTGAT
LOC_Os04g58400
OsAffx.14468.1.S1_at--803--7091Chr04:34526985..34527009 (25 bp)
GTCAGCGAGTTTTTCCGTAGCAACG
LOC_Os04g58400
OsAffx.14468.1.S1_at--1145--2691Chr04:34526957..34526981 (25 bp)
AAGCTCAAGCTCAAATTGTTCCCCA
LOC_Os04g58400
OsAffx.14468.1.S1_at--1004--10771NONE
TTGTTCCCCACAGGTTACAGGATGA
NONE
OsAffx.14468.1.S1_at--32--1311NONE
AGATGTCTGGTCATGTGGCATCCAC
NONE
OsAffx.14468.1.S1_at--170--791NONE
ATGTGGCATCCACCTGTCAGGGCAT
NONE
Target Sequence 
TCCTGGACGGACTATCTTCATGCTAGATGATGAGGATGATATAGAAGAAAAAATAAGTTGTGCTTTCTGCCCTTCGAGAG
TAGTAGCATGCAACCCATGTTTGGAGTATATAAAATCTGTTGTCCTTCCTTGGTTTGGGAAGTTTGAGGTCGTTCAGAAG
GAAGGGAATGGTAGCAACAAGACATATTCAAGCATGAAGGAACTTATTGCTGATTATGAAAGTGGCGATCTTGACTCTTT
TGATGTCAAGTTGGCACTGGGAAAAGCAATAAATGACATATTAGAGCTTGTCAGCGAGTTTTTCCGTAGCAACGAGGAAG
CTCAAGCTCAAATTGTTCCCCACAGGTTACAGGATGAAATTGGGGCAGATATCCAGAAGATCCAATTGCAGAACGAGGAG
ATGTCTGGTCATGTGGCATCCACCTGTCAGGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14468.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis